Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0211 ATGGCGGTTCTACCAACCTCTTCAAGCTTGGATCTCACCATCTCCGTACCCGGCTTCGATTCATTCTCATCACCACTTCCTCCATCTGTGAGAGATTTGGACATGAATAGAGCACCAGATGAAGAGGAATGGATGATGGGAAGCATGGAGGAAGATGAAGAAAACAACAATGGAAACCAATATCCAAGGAAGAAGCTTCGTTTGTCAAAGGAACAGTCTCAACTTTTAGAACAAAGCTTCAGACAAAACCATACCTTAAACCCAAAACAAAAGGAGACTCTGGCAGAAGTGTTGAAGTTGAAGCCAAGGCAGGTTGAGGTTTGGTTTCAGAACAGAAGGGCCAGGAGCAAGCTGAAGCAAACCGAGATGGAGTGCGAGTATCTTAAGAGATGGTTCGGGCTCTTGACGGAACAAAACAAGAAACTACAGAAGGAAGTGGAGGAACTGAGGGCGATGAAGGTGGCGCCGCCGACGGTGATCTCGCCGCACAGCTGCGAGCCGCTGCCGGCGGCGAACCTCACCATGTGCCCACGCTGTGAACGCGTGACCACCACCGCCCACGACAAGGCCCGCATTGTCGTTTAA 585 50.43 MAVLPTSSSLDLTISVPGFDSFSSPLPPSVRDLDMNRAPDEEEWMMGSMEEDEENNNGNQYPRKKLRLSKEQSQLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPAANLTMCPRCERVTTTAHDKARIVV 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1565784 1571598 + Sed0007127.1 Sed06g0211 716754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0211 194 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed06g0211 194 Gene3D - 55 125 - -
Sed06g0211 194 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677(InterPro)
Sed06g0211 194 FunFam Homeobox-leucine zipper protein 18 48 124 - -
Sed06g0211 194 Coils Coil 132 155 - -
Sed06g0211 194 Pfam Homeobox associated leucine zipper 119 153 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g0211 194 SUPERFAMILY Homeodomain-like 45 120 IPR009057 -
Sed06g0211 194 SMART halz 119 162 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g0211 194 CDD homeodomain 62 120 IPR001356 GO:0003677(InterPro)
Sed06g0211 194 Pfam Homeodomain 63 117 IPR001356 GO:0003677(InterPro)
Sed06g0211 194 SMART HOX_1 61 123 IPR001356 GO:0003677(InterPro)
Sed06g0211 194 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 48 186 IPR050762 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0211 Sed-Chr6:1565784 Sed11g1659 Sed-Chr11:31869893 6.20E-51 dispersed
Sed06g0211 Sed-Chr6:1565784 Sed12g1276 Sed-Chr12:9306669 8.10E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38789 PF00046 Homeodomain 2.10E-16 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0211 K09338 - csv:101222713 345.895