Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0222 ATGGAGCTTGTGGTTTTGAGGTACTTTTCTTTGTTCTTTGTATTGTTGGCGTGTGTTCTGCATCTGGTTCGAGCTGGAGATGCAGAAGCTTTGTTGGCTTTGAAAGAATCTCTCGACCATGGAAACTCGCTTTCATGGCGAGGAGGTTCGGTCTGCAACTGGCAAGGTGTAAAAGAGTGCTTAAATGGACGAGTAACTAAGCTTGTTTTGGAGCATCTAAATCTCTCTGGTGTTCTAGATAACGAGATTTTGAATCGTTTAGATCAGCTTCGTGTTCTTAGTTTCAAAGGAAATTCACTTTCCGGCCAAATCCCTGACCTCTCCGGTCTTGTTAATCTCAAATCTATATATTTAAGTGACAACAACTTTTCCGGCGAGTTTCCGAGCTCTATTTCCGATCTCCACCGCTTGAAGGTCGTTGTTCTTTCCGGTAACCAGATATCTGGCCCCATTCCAGACTCGCTGCTGAAACTCTCCCGTCTCTATGTTCTACACCTTCAGGACAACCAATTCAGCGGCTCTGTCCCTCCTTTCAACCAAACCAGTCTTCGATTCTTCAATGTCTCTAACAACCGACTCTCCGGTGACATCCCGACAACCCCGACCTTGGTCCGATTCAACGTGTCGTCGTTCTCTGGCAACGTGGAGCTTTGTGGAGAACAAATTCAGAACCCATGTGGGAATGTTACCACTGTGCCATCATCAAGTCCCAGTTCTCCACAATTCTCAAGATCAAGCTCGTCTTCTAGACGCAACAAACTGGTGAAGATAATAGCAGGAAGTGTAGGTGGGGTTGTTGGACTTGTATTAATCATTCTTCTACTGTGTATAATTTGCAAATGTAGGGATAGAAAGAGCCTAGCAGAGGTTAGAAGCAAAGGAATTGGCGACAACGGGGCGGGGATAGAGGAAGCGACTGTAACTGCGGGCGGTGACATAAGAGGTAGCAATGGAGGAAAGCAAGGGGGATTTTCTTGGGAAAGTGAAGGACTAGGGAGTTTAGTGTTCTGTGGAGCAGGGGATCAGAAAATGAGTTATTGCTTAGAAGATCTGTTGAAAGCTTCAGCGGAGACTTTGGGAAGAGGGACCATTGGTAGCACATACAAGGCAGTGATGGAATCTGGTTATATTGTTACAGTGAAACGGCTTAAGGATGCAAGGTACCCTCGAGCCGACGAGTTCGGATTGCAGATGGAGGTTCTTGGACGGCTCAGACACCCCAACTTGGTCCCTCTCAGGGCCTATTTCCAGGCCAAGGAGGAACGCTTGCTCGTATTCGATTACTTCCCCAATGGCAGTCTCTTCTCTCTCATCCACGGATCAAGAACTTCAGGAGGAGGAAAGCCTCTTCATTGGACATCCTGCCTCAAAATAGCTGAAGACTTGGCCAATGGTCTTCTGTATATCCACCAGAATCCTGGCTTAACTCATGGAAACCTGAAATCCTCAAATGTGCTATTAGGATCTGATTTCGAGTCATGTCTTACTGATTATGGTCTTAACTTGTTCCGAGATCCCGACTTCCTCGAAGAACCTAGTGCAACTTCCCTCTTTTACCGAGCTCCCGAATGTCGCGACATCCGTAAGCCAACCACACAACAAGCCGACATCTATAGCTTTGGTGTTCTTCTCTTGGAGCTTCTAACAGGAAAAACACCATTTCAAGATCTAGTCCAAGAATATGGTTCTGACATTCCTAAGTGGGTTAATTCGGTAAGAGAAGAGGAGACGGAGTCCGGGGACGAACCTGCGTCTGGAAATGAGGCATCGGAAGAGAAACTTCAAGCTCTTGTGAACATCGCAATGGCTTGCGTTTCGCTTATGCCGCAGAACCGACCAACGATGAGGGACGTTCTAAAGATGATAAGAGATACGCGAGCTGAGGCTCAAATCTCATCCAACAGTAGTGACCATTCACCAGGGAGATGGTCAGATATTGTCCAGAGTTTGCCAAGGGAAGAACATTTAAGCATTTGA 1977 46.59 MELVVLRYFSLFFVLLACVLHLVRAGDAEALLALKESLDHGNSLSWRGGSVCNWQGVKECLNGRVTKLVLEHLNLSGVLDNEILNRLDQLRVLSFKGNSLSGQIPDLSGLVNLKSIYLSDNNFSGEFPSSISDLHRLKVVVLSGNQISGPIPDSLLKLSRLYVLHLQDNQFSGSVPPFNQTSLRFFNVSNNRLSGDIPTTPTLVRFNVSSFSGNVELCGEQIQNPCGNVTTVPSSSPSSPQFSRSSSSSRRNKLVKIIAGSVGGVVGLVLIILLLCIICKCRDRKSLAEVRSKGIGDNGAGIEEATVTAGGDIRGSNGGKQGGFSWESEGLGSLVFCGAGDQKMSYCLEDLLKASAETLGRGTIGSTYKAVMESGYIVTVKRLKDARYPRADEFGLQMEVLGRLRHPNLVPLRAYFQAKEERLLVFDYFPNGSLFSLIHGSRTSGGGKPLHWTSCLKIAEDLANGLLYIHQNPGLTHGNLKSSNVLLGSDFESCLTDYGLNLFRDPDFLEEPSATSLFYRAPECRDIRKPTTQQADIYSFGVLLLELLTGKTPFQDLVQEYGSDIPKWVNSVREEETESGDEPASGNEASEEKLQALVNIAMACVSLMPQNRPTMRDVLKMIRDTRAEAQISSNSSDHSPGRWSDIVQSLPREEHLSI 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1658158 1663624 - Sed0001834.1 Sed06g0222 716765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0222 658 SUPERFAMILY Protein kinase-like (PK-like) 357 625 IPR011009 -
Sed06g0222 658 Gene3D Ribonuclease Inhibitor 180 229 IPR032675 -
Sed06g0222 658 Gene3D Transferase(Phosphotransferase) domain 1 429 644 - -
Sed06g0222 658 FunFam Nuclear pore complex protein NUP107 24 177 - -
Sed06g0222 658 ProSiteProfiles Protein kinase domain profile. 353 631 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0222 658 MobiDBLite consensus disorder prediction 629 658 - -
Sed06g0222 658 SUPERFAMILY L domain-like 43 218 - -
Sed06g0222 658 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Sed06g0222 658 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 26 630 IPR046959 -
Sed06g0222 658 MobiDBLite consensus disorder prediction 629 643 - -
Sed06g0222 658 Pfam Leucine rich repeat N-terminal domain 26 57 IPR013210 -
Sed06g0222 658 MobiDBLite consensus disorder prediction 228 247 - -
Sed06g0222 658 Gene3D Phosphorylase Kinase; domain 1 339 428 - -
Sed06g0222 658 Pfam Protein kinase domain 356 620 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0222 658 Pfam Leucine rich repeat 112 171 IPR001611 GO:0005515(InterPro)
Sed06g0222 658 Gene3D Ribonuclease Inhibitor 25 179 IPR032675 -
Sed06g0222 658 Pfam Leucine Rich Repeat 182 199 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3060 Sed-Chr4:41636621 Sed06g0222 Sed-Chr6:1658158 2.00E-279 dispersed
Sed06g0222 Sed-Chr6:1658158 Sed11g0086 Sed-Chr11:807827 1.20E-77 dispersed
Sed04g3059 Sed-Chr4:41636621 Sed06g0222 Sed-Chr6:1658158 2.00E-279 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79334 PF00069 Pkinase 9.50E-35 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0222 - - - 0.0