Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0245 ATGGATGACGAGGTCGCTCAGCGGGTTCTCCAAGAAGGCAGAGATTTCTACCAGAACCAGCCTCCTTCCACTTCCTCTTCTTCCTCCTCCTCCATCCTTCAGTCGCTGCCTCTTCACGTGTCTTTTGATCATGGATATTATCTATTAGTAAAATCCATCCAAGAACTTAGAGAGAAAAAAGATGGACTTGTAACAGTTGGCATTGGTGGTCCAAGCGGTTCTGGTAAATCCAGCTTAGCAGAGAAAGTGGCATCTGTTATTGGCTGTAATGTTATATCGATGGAAAACTATCGTGATGGAGTTGATGAGGGGCATGATTTGGATTCAATAGACTTTGATCTTCTAGTTCAGAATCTTGAGGATTTGACAAATGGAAAAGACACCATGATCCCAGTTTTTGACTTTCATCTAAAGAAACGGGTCAGTTCAAAAGTAATAAAGAGTGCCTCATCTGGGGTGGTAATCATTGATGGAACCTACGCATTACATGCAAAATTACGTTCTTTGCTAGATATTCGGGTTGCAGTGGTTGGTGGAGTTCATTTTAACCTTCTCTCCAAAGTTCGGCATGATATTGGAGATTCATGTTCATTGGATTACCTTATTGATAGTATCTTCCCATTGTTTAGAAAACACATAGAGCCGGACCTTCATCATGCCCAGATAAGAATTAACAACAGCTTTATCTCATCATTTAGGGAGGCAATATACAAGCTGAAATGTAGAAGTGTGTTCCCAGATGTAGATTCTGCCCATGCTTTTCAAGGAAATAAAACACATGCAGATAATTTTATTGAGATGTATCTTAGACCTCCATCTGCAAGTGAAGAAGCGCGCATAAATGACTGGATTAAAGTGCGGCAATCTGGTATCAAGTACTACTTATCACTTGGTGACCAGAGGATAGTTGACAAAAATTTTATCATCAGACCTAAAGCTGAATTTGAGGTTGGACGAATGACTTTAGGTGGTTTGCTGGACTTGGGGTATTCGGTAGTGGTTGGCTATAAACGGGCATCTATATCGGTAGATAAGGGCAATGTTTCTGTGTCGTTTGAAACCATTGATTCTCTTGGTGAGACATTCATGGTGCTAAGAAGCTCAAATAGAAAGATCGTTGGAGAAGAAGTGCTGAGGATGGGTTTCAGAGAATCTTGGATTACAAAGTCTTATCTGGAGATGATTCTTGAAAGAAAAGGTGTACCACGGTTAAATACACCTCCACTTCTACCAAATACATCTGTGGCTAATAACCGAGAAAAATTTGTCATTGTTCCAAGGCCTATCCGTGTTACTTCGAACCCTGTTTCTCGACTTGAGGATCTCTCTCAGCCCTGGACTCGGTCTCCAACAAAATCTCAAATGGAACCAGTAGTTGCAACATGGCAATTTATTAGTCCACCTAGATCTGATAGTTTAGTGACCGATCCTTCCTCTTTCAGGGACTCTACAAGGCTTGCTCCGATGCCTGATTCATGTGACCTAGATAGAGGTTTGCTTTTAGCTGTTCAAGCGATTCAGGCGTTAATGGAGAATAAAGGTGTTCCTGTTATTGTTGGAATTGGTGGTCCAAGTGGATCAGGGAAGTCTAGTTTAGCTCATAAAATGGCTAATATTGTTGGATGTGAAGTAATTTGCCTTGAGAGTTATTACAAGTCAGAGCAAGTGAAGGATTTCAAATATGACGATTTCAACACACTTGATCTGTCACTCCTATCCAAGAATATTGATGACATGAGAAATGGTCGAAGAACAAAAGTACCAGTATTTGACTTGGAGAATGGTGCTCGAAGTGGTTTTAAGGAGCTTCAAGTTTCCGAAGATTGTGGAGTGATCATTTTTGAAGGAGTTTATGCTTTACATCCGGATATCAGGAAATCGCTTGACTTGTGGATTGCTGTTGTTGGAGGTGTTCATTCTCATCTTATTTCTCGAGTCCAAAGGGATAAATGCAAAGCAGGGTGCTTCATGTCACAAAATGACATAATGATGACAGTTTTTCCTATGTTTCAGCAGTACATTGAACCACATCTTGTTCACGCACATCTCAAAATACGGAATGACTTTGATCCGGTGCTTTCACCTGAGAGCTCATTATTTGTGCTAAAGAGTAACAAGCAGGTGGTCTATCAAGATATACTCAAAATTCTTGAATCATCCAAGGTTTGCAGTTCTATACAAAATTTCATTGATATATATTTCAGGCTTCCAGGAATCCCTGCAAATGAGCAGTTGACAGAGAGTGATTGTATACGAGTAAGAATATGTGAAGGACGTTTTGCATTATTAATACGGCAGCCTATAAGAGAAGGGAATTTCATCATTCAACCTAAGGTGGACTTTGACATTAGTATTAGTACAGTCGCTGGCCTTCTGAATTTGGGGTATCAAGCTATGGCTTATATTGAAGCATCTGCGTACATATACCAAGATGGGAAGATTCTAATTGAGGTTGACCATTTACAAGATGTTCCTTGTCCTTACCTACAAATAAAAGGGGTTGATAAAAAGGCTGTTGCATCAGCTGGTTCCAGGCTTCAACTGAATGATTCGTATACTACAAAGGTTATGCTTTCCTACTTGCATATTGTTCTTTGA 2598 40.15 MDDEVAQRVLQEGRDFYQNQPPSTSSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKDGLVTVGIGGPSGSGKSSLAEKVASVIGCNVISMENYRDGVDEGHDLDSIDFDLLVQNLEDLTNGKDTMIPVFDFHLKKRVSSKVIKSASSGVVIIDGTYALHAKLRSLLDIRVAVVGGVHFNLLSKVRHDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFISSFREAIYKLKCRSVFPDVDSAHAFQGNKTHADNFIEMYLRPPSASEEARINDWIKVRQSGIKYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLDLGYSVVVGYKRASISVDKGNVSVSFETIDSLGETFMVLRSSNRKIVGEEVLRMGFRESWITKSYLEMILERKGVPRLNTPPLLPNTSVANNREKFVIVPRPIRVTSNPVSRLEDLSQPWTRSPTKSQMEPVVATWQFISPPRSDSLVTDPSSFRDSTRLAPMPDSCDLDRGLLLAVQAIQALMENKGVPVIVGIGGPSGSGKSSLAHKMANIVGCEVICLESYYKSEQVKDFKYDDFNTLDLSLLSKNIDDMRNGRRTKVPVFDLENGARSGFKELQVSEDCGVIIFEGVYALHPDIRKSLDLWIAVVGGVHSHLISRVQRDKCKAGCFMSQNDIMMTVFPMFQQYIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVVYQDILKILESSKVCSSIQNFIDIYFRLPGIPANEQLTESDCIRVRICEGRFALLIRQPIREGNFIIQPKVDFDISISTVAGLLNLGYQAMAYIEASAYIYQDGKILIEVDHLQDVPCPYLQIKGVDKKAVASAGSRLQLNDSYTTKVMLSYLHIVL 865
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1983982 2002188 - Sed0013317.2 Sed06g0245 716788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0245 865 PRINTS Uridine kinase signature 543 554 - -
Sed06g0245 865 PRINTS Uridine kinase signature 639 649 - -
Sed06g0245 865 PRINTS Uridine kinase signature 516 533 - -
Sed06g0245 865 Gene3D - 515 708 IPR027417 -
Sed06g0245 865 Gene3D - 64 242 IPR027417 -
Sed06g0245 865 CDD UMPK_like 532 688 - -
Sed06g0245 865 CDD UMPK_like 79 227 - -
Sed06g0245 865 SMART AAA_5 62 212 IPR003593 GO:0016887(InterPro)
Sed06g0245 865 SMART AAA_5 515 668 IPR003593 GO:0016887(InterPro)
Sed06g0245 865 SUPERFAMILY CYTH-like phosphatases 724 832 IPR033469 -
Sed06g0245 865 PANTHER URIDINE KINASE 51 288 - GO:0005737(PANTHER)
Sed06g0245 865 Pfam Phosphoribulokinase / Uridine kinase family 66 224 IPR006083 GO:0005524(InterPro)|GO:0016301(InterPro)
Sed06g0245 865 Pfam Phosphoribulokinase / Uridine kinase family 518 685 IPR006083 GO:0005524(InterPro)|GO:0016301(InterPro)
Sed06g0245 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 229 IPR027417 -
Sed06g0245 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 512 688 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0245 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0245 Sed-Chr6:1983982 Sed06g1831 Sed-Chr6:42750006 1.10E-54 dispersed
Sed06g0244 Sed-Chr6:1983982 Sed06g0245 Sed-Chr6:1983982 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g983 . . . . . . . . . . . . . . Sed06g0245 . . Bhi07g00114 Tan04g1664 Cmetu10g0662 Lac13g1622 . . . . . . . . . . . . . . . . Chy10g00123 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008378 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 2 1 1 35