Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0246 ATGGGAGATGATGGCAATAACAACAATAATAATACCGGTAACGGCGGTAGCCGGTTGGCGCGGGCGGCGGAGCACTGCGTCGAGATCATTCATCCGGTGGTTCCGCCGCCACGCAGAAGCTTCTTTCGGAGGCTAGGCAACCGGCTGAAGGAGACTTTTTTCCCCGACGATCCGCTCCGGCAGTTCAAAGGCCAGTCTCCGGCGAGGAAATGGCTCATCGGAGCTCAGTATTTCTTCCCAATTCTTCAATGGGGACCTCATTATAATCTTAGGCTTTTTAAATCTGATGTTGTTGCTGGCCTCACCATTGCTAGCTTGGCCATCCCTCAGGGTATTAGCTATGCTAAACTTGCTAATTTGCCTCCCATTGTTGGGCTTTATTCAAGCTTTGTCCCACCATTGATATATGCTGTTCTTGGAAGCTCAAGAGACCTAGCAGTGGGGCCTGTTTCAATAGCCTCACTAATACTAGGATCCATGCTGAGGCAAGAAGTCTCCCCCATCAAAGATCCCATCCTCTTTCTCCAACTCGGCTTCACGTCCACCTTCTTCGCCGGTCTATTCCAAGCCTCGCTCGGTTTCTTAAGACTTGGATTTATAATTGATTTTCTGTCGAAGGCAACTTTGATTGGATTTATGGCGGGAGCAGCCATTATTGTGTCTCTGCAGCAACTTAAAGGATTGCTTGGAATTACCCATTTCACCCCACAAATGGGTTTAATTCCTGTTTTGACCTCGGTTTTCCATCACACTCACGAGTGGTCATGGCAGACTATCTTGATGGGCTTTTGTTTTCTTCTCTTCCTTCTAATCACAAGACACATTAGTATGAAAAAGCCAAAGTTGTTCTGGATATCAGCTGGAGCTCCATTATTGTCTGTGATTCTTTCAACAATATTAGTTTTTGCATTCAAGGCTAACCGCCAAGGCATCAGTATAATAGGAAAACTGGAAGAAGGATTGAACCCACCATCATGGAACATGCTTCGTTTTCAAGGCTCACATCTTGGCCTTGTTATTAAAACTGGCCTTGTCACCGGCATCATCTCTCTTACTGAAGGAATAGCAGTGGGGCGAACATTTGCAGCTATAAAGGACTACCGAGTCGATGGCAACAAAGAAATGATTGCGATCGGCCTCATGAACGTCGTCGGCTCATTCACTTCGTGCTACGTCACAACAGGTGCGTTTTCTCGGTCGGCAGTGAACCATAACGCGGGGGCGAAAACTGCAGTGTCGAACATGATAATGTCGGTGACGATCATGGTGACACTGCTGTTTCTGATGCCTCTGTTTGAGTACACGCCCAATCTCGTGCTCGCTGCCATCATCGTCACCGCTGTTATTGGCCTTATCGACCTCCCTGCAGCTTACGCCATTTGGAAGGTCGATAAGTTCGATTTCGTTGTCATGCTCTCTGCGTTCTTCGGCGTCATTCTCATCTCCGTCCAACACGGCCTCGCCATTGCTGTTGGCATATCCATTTTCAAAATCATATTGCAAATAACCAGACCAAAAACAGTGATGTTGGGGAACATAGCTGGAACAGACATATATAGAAACCTTGACCATTACAAAGATGCAATGAGTGTTCAAGGTTTCCTCATTTTAAGCATTGAAGCTCCAATCAACTTTGCTAACACTACATATCTCAATGAAAGGATTTTGAGATGGATTGAAGACTATGAAGCTGAACAGAAGGAGGGCTCTGGCCTTAAGTTTGTCATCTTAGAATTATCAGCTGTGAGTGCTATAGACACCAGTGGAGTACTACTCTTCAAGGATCTAAGAAGAGCATTGGAAAAGAAGGATGTTGAGCTTGTATTGGTGAACCCATTGGGAGAAGTTTTGGAAAAGTTGCAAAAAGCTGATGAAAATCAAGAGATTTTGAGGCCAAATAATTTGTTCTTGACAGTGGGAGAGGCCATTGCTTCACTATCAGCAACAATGAAGGGACAATCCTCAACTATATAG 1974 45.49 MGDDGNNNNNNTGNGGSRLARAAEHCVEIIHPVVPPPRRSFFRRLGNRLKETFFPDDPLRQFKGQSPARKWLIGAQYFFPILQWGPHYNLRLFKSDVVAGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLIYAVLGSSRDLAVGPVSIASLILGSMLRQEVSPIKDPILFLQLGFTSTFFAGLFQASLGFLRLGFIIDFLSKATLIGFMAGAAIIVSLQQLKGLLGITHFTPQMGLIPVLTSVFHHTHEWSWQTILMGFCFLLFLLITRHISMKKPKLFWISAGAPLLSVILSTILVFAFKANRQGISIIGKLEEGLNPPSWNMLRFQGSHLGLVIKTGLVTGIISLTEGIAVGRTFAAIKDYRVDGNKEMIAIGLMNVVGSFTSCYVTTGAFSRSAVNHNAGAKTAVSNMIMSVTIMVTLLFLMPLFEYTPNLVLAAIIVTAVIGLIDLPAAYAIWKVDKFDFVVMLSAFFGVILISVQHGLAIAVGISIFKIILQITRPKTVMLGNIAGTDIYRNLDHYKDAMSVQGFLILSIEAPINFANTTYLNERILRWIEDYEAEQKEGSGLKFVILELSAVSAIDTSGVLLFKDLRRALEKKDVELVLVNPLGEVLEKLQKADENQEILRPNNLFLTVGEAIASLSATMKGQSSTI 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2020216 2031293 + Sed0024759.1 Sed06g0246 716789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0246 657 CDD STAS_SulP_like_sulfate_transporter 525 638 - -
Sed06g0246 657 Pfam Sulfate permease family 93 473 IPR011547 GO:0016020(InterPro)
Sed06g0246 657 Pfam STAS domain 528 642 IPR002645 -
Sed06g0246 657 SUPERFAMILY SpoIIaa-like 530 646 IPR036513 -
Sed06g0246 657 PANTHER SULFATE TRANSPORTER 48 644 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g0246 657 NCBIfam sulfate permease 80 641 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g0246 657 FunFam Sulfate transporter 31 504 649 - -
Sed06g0246 657 ProSiteProfiles STAS domain profile. 524 646 IPR002645 -
Sed06g0246 657 Gene3D STAS domain 504 649 IPR036513 -
Sed06g0246 657 ProSitePatterns SLC26A transporters signature. 122 143 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0246 Sed-Chr6:2020216 Sed07g1494 Sed-Chr7:11746168 6.20E-228 dispersed
Sed06g0246 Sed-Chr6:2020216 Sed09g1100 Sed-Chr9:34958780 1.60E-199 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0246 K17471 - csv:101219163 1132.86