Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0268 ATGAAGTTTTTGAGGAGGGTGAAAAAGGAGGAAAAGAGAAGTGTTGGGATGAGTATAAAGATGCAGCACAGCCACCACTCAGTGGCTGTGAGGTACAATGAGCAAATTGGGAGCAAAAAAGGGGTCACATTCATTCAAGCCCACAGGGCTTGGCTTCCTAAGTTTTTTTTGCTTTGGGTTCTGTTGGTGGCTTTCATTAGTATGCTGATCTACAAGGGAATGGATGCTGACAGTATGGTTAGAAGAAGGGAAGTTTTGGGGAGTATGTGTGACCAAAGGGCAAGGATGCTTCAGGATCAATTCACTGTTAGTGTCAACCATGTCCATGCTTTGGCTATTCTCATTTCCACCTTCCACTACTTCAAGAACATATCGGCAATCGATCAGGAAACTTTTGCTGAGTACACGGCTAGAACTGCTTTCGAGCGGCCTTTGCTTAGCGGCGTGGCGTTTGCGCAAAGAGTGGTGCACTCTGAACGGGAGAAATTTGAGAAGCAACATGGGTGGATTATAAAAACAATGGAAAAGGAACCATCGCCTATAAGGGATGAGTATGCGCCAGTCATATTTTCCCAGGAAACTGTTTCCTACATTGAATCTCTTGATATGATGTCTGGAGAGGAGGACCGCGAAAACATTTTACGGTCAAGAGAAACAGGTAAAGCTGTTTTAACGAGCCCTTTCAGACTACTGGGTTCTCATAATCTTGGAGTTGTGTTGACGATCCCTGTTTATAAAACCAAGCTTCCTGCAAATCCAACTATGGATGAGCGAACTCGAGCAACAGCAGGTTACCTTGGTGGAGCATTTGATGTGGAATCACTTGTGGAAAATTTACTTGGGCAACTTGCTGGAAATCAGGCCATTTTGGTGAATGTATACGATATCACGAACTATTCCGATCCCCTAGTCATGTATGGTCATCAATATGTAGATGGTGACATGTCTCTTTTGCATGAAAGCAAATTAGATTTTGGAGATCCATTTAGGAAGCATGAGATGATATGCAGATACCATCAGAAAGCACCGACATTGTGGACGGCACTTACGACGGCGTTCTTGTTCTTTGTGATTGGCTTGTTAGTGGGATATATCTTGTATGGTGCAGCAACTCATATTGTTAAAGTTGAGGACGATTTCCATGAAATGCAAGAACTGAAAGTTCAAGCTGTAGCTGCCGATGTTGCAAAGTCTCAGTTTCTCGCCACCGTCTCTCATGAAATCAGGACACCCATGAATGGCATCCTTGGAATGCTTGCTCTACTTCTCGATACGGAATTGAGTTCAACTCAAAGGGATTATGCTCAAACTGCTAAGGCATGTGGAAAAGCACTGATAGCATTAATAAATGAAGTGCTTGACCGGGCGAAAATTGAAGCTGGGAAGTTGGAGCTTGAAGCGGTTCCGTTTGACCTTAGATTGATACTAGATGATGTTCTTTCTTTGTTTTCTGAAAAGTCAAGGCACAAGGGAGTCGAGTTGGCAGTATTTGTTTCGGACAAAGTTCCGGAAATCGTCATGGGGGATCCTGGAAGGTTCAGGCAAGTAATCACTAATCTTGTGGGTAACTCTGTAAAATTCACAGAACAAGGACATATATTCGTCAAAGTTCAATTAGTTGAACAATCAACGGCCTCTACGAAGACCAAATCTGAAACTCACGTGAATGGAAACTTAGATGATGATGCATCATACCGTAAACATCAGTTTGAAACCTTAAGTGGACTCGAGGCAGCTGATAACCAAAACAGTTGGGAAACTTTTAAGCATCTCATTGCAAATGAGGGATTCCGACCAAACACTTCAAGCACTCTTACGGTAGCGAATGAAAGTTCTGATATCGTTACTGTCATGATATCCGTTGAAGATACTGGAATCGGGATTCCGGTATGTGCCCAAGGTCGAATTTTTATGCGATTCATGCAAGCAGATAGCTCAACCTCTAGAAACTATGGTGGAACTGGTATTGGCTTAAGCATCAGTAAGTGTCTAGTTGAACTAATGGGCGGTCAGATAAACTTTGTAAGCCGGCCACAGGTTGGAAGCACATTCTCGTTCACTGCTGTCTTCGGGAAATGTGAGAAGAAAGCAACAGTCGACATTAAAAAGTCTAACTGGGAGGAACTCCCTTCTACGTTTAGAAAACTGAAAGCTGTCATAGTCGACGGGAAATCAGTTAGAGCTGCTGTGACCAAATACCATTTGAAGAGACTTGGGATCCTGGTTGAAATTGCCAGTAGTGTCGAGATGGCTGCAACTTTATGGGGTAAAAATGGATCTGTTAGATCAAGTAGTATCTTTCAACCCGACATAATTCTTCTCGAGAAAGATATCTTTATTTCAAGTGAGGAACTTGGTTCTTCTAATCTATTTCATCAACTAGACTGTAATCAGAATGGTCATACCTTTAAGTTTCCGAAATTAATCCTTCTCGCAACCAGCATAAGCACAGATGAATTTGATAAAGCGAAGGAAGCAGGTTTTTCGGATACCTTGATCATGAAACCACTGAGAGCAAGCATGATAGGTGCATGTCTTCAACAAGTGCTCGGCTTGGGAAAGAAACGACAGCCTGGGAAGGCCATGGCTAATGGCTCTACCATCCTTAGAGGTGCTTTGAAGAAATTCGGTGCTGATGTAGAGTGTGCTGATAGCGGAAAAGCTGCACTGGCATTGGTTAAACTTCCACACAGCTTTGATGCTTGCTTTATGGATATTCAGATGCCAGAAATGGATGGATTCGAAGCAACCCGAAGAATCAGGCTGATGGAGAGCATGGAAAATGCACTGATTAGAGAATCTGATGACAAAGAGAACGGGAGAGACGAGTGGCATATTCCAATATTAGCCATGACCGCAGATGTAATTCTCGCAACGTACGACAAGTGCCTGAAAAGTGGGATGGATGGATACGTAACGAAGCCATTCGAGGAAGAGAACCTTTACCAGGCAGTTTCCAAGTTTTTCTAA 2970 43.06 MKFLRRVKKEEKRSVGMSIKMQHSHHSVAVRYNEQIGSKKGVTFIQAHRAWLPKFFLLWVLLVAFISMLIYKGMDADSMVRRREVLGSMCDQRARMLQDQFTVSVNHVHALAILISTFHYFKNISAIDQETFAEYTARTAFERPLLSGVAFAQRVVHSEREKFEKQHGWIIKTMEKEPSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRSRETGKAVLTSPFRLLGSHNLGVVLTIPVYKTKLPANPTMDERTRATAGYLGGAFDVESLVENLLGQLAGNQAILVNVYDITNYSDPLVMYGHQYVDGDMSLLHESKLDFGDPFRKHEMICRYHQKAPTLWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQELKVQAVAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAKACGKALIALINEVLDRAKIEAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFVSDKVPEIVMGDPGRFRQVITNLVGNSVKFTEQGHIFVKVQLVEQSTASTKTKSETHVNGNLDDDASYRKHQFETLSGLEAADNQNSWETFKHLIANEGFRPNTSSTLTVANESSDIVTVMISVEDTGIGIPVCAQGRIFMRFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFVSRPQVGSTFSFTAVFGKCEKKATVDIKKSNWEELPSTFRKLKAVIVDGKSVRAAVTKYHLKRLGILVEIASSVEMAATLWGKNGSVRSSSIFQPDIILLEKDIFISSEELGSSNLFHQLDCNQNGHTFKFPKLILLATSISTDEFDKAKEAGFSDTLIMKPLRASMIGACLQQVLGLGKKRQPGKAMANGSTILRGALKKFGADVECADSGKAALALVKLPHSFDACFMDIQMPEMDGFEATRRIRLMESMENALIRESDDKENGRDEWHIPILAMTADVILATYDKCLKSGMDGYVTKPFEEENLYQAVSKFF 989
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2245557 2252838 - Sed0015512.1 Sed06g0268 716811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0268 989 Pfam His Kinase A (phospho-acceptor) domain 396 461 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed06g0268 989 FunFam Histidine kinase 4 127 342 - -
Sed06g0268 989 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 603 687 IPR003594 -
Sed06g0268 989 SMART REC_2 857 985 IPR001789 GO:0000160(InterPro)
Sed06g0268 989 SMART HKATPase_4 508 692 IPR003594 -
Sed06g0268 989 CDD REC_hyHK_CKI1_RcsC-like 868 985 - -
Sed06g0268 989 Gene3D - 369 459 - -
Sed06g0268 989 ProSiteProfiles Response regulatory domain profile. 717 850 IPR001789 GO:0000160(InterPro)
Sed06g0268 989 SUPERFAMILY CheY-like 713 851 IPR011006 -
Sed06g0268 989 SUPERFAMILY CheY-like 868 987 IPR011006 -
Sed06g0268 989 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 450 687 IPR036890 -
Sed06g0268 989 PANTHER TWO-COMPONENT HISTIDINE KINASE 46 989 IPR050956 -
Sed06g0268 989 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 382 462 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed06g0268 989 ProSiteProfiles Response regulatory domain profile. 855 989 IPR001789 GO:0000160(InterPro)
Sed06g0268 989 Gene3D - 74 126 - -
Sed06g0268 989 PRINTS Bacterial sensor protein C-terminal signature 617 631 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed06g0268 989 PRINTS Bacterial sensor protein C-terminal signature 676 689 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed06g0268 989 PRINTS Bacterial sensor protein C-terminal signature 652 670 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed06g0268 989 PRINTS Bacterial sensor protein C-terminal signature 635 645 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed06g0268 989 CDD HisKA 396 457 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed06g0268 989 CDD HATPase_EvgS-ArcB-TorS-like 513 690 - -
Sed06g0268 989 FunFam Histidine kinase 4 368 459 - -
Sed06g0268 989 ProSiteProfiles CHASE domain profile. 123 335 IPR006189 -
Sed06g0268 989 Gene3D - 711 852 - -
Sed06g0268 989 Gene3D - 864 989 - -
Sed06g0268 989 Gene3D CHASE domain 127 342 IPR042240 -
Sed06g0268 989 ProSiteProfiles Histidine kinase domain profile. 403 692 IPR005467 -
Sed06g0268 989 SMART HisKA_10 396 461 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed06g0268 989 Coils Coil 446 466 - -
Sed06g0268 989 SMART CHASE_2 123 308 IPR006189 -
Sed06g0268 989 Gene3D - 460 695 IPR036890 -
Sed06g0268 989 Pfam CHASE domain 126 306 IPR006189 -
Sed06g0268 989 Pfam Response regulator receiver domain 868 985 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0268 Sed-Chr6:2245557 Sed06g0270 Sed-Chr6:2245557 0.00E+00 dispersed
Sed06g0268 Sed-Chr6:2245557 Sed06g0269 Sed-Chr6:2245557 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38790 PF02518 HATPase_c 7.80E-32 CL0025 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0268 K14489 - csv:101204531 1687.93