Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0275 ATGGGTCTCTTCTTCTTCCTCTCCACAATGTCTCTGCTTCCATTTCTCCCCTTCATTCCCCTGTTTCTCTCCCCCCATTCTGCCGCCGCCGCCGGAACCCACCACCGCCGCCTCCTCCACCAACCCTTTTTCCCTTGGGCTTCAATGGCTCCATCTCAGCCTCCATTTCCCTTTTCCCCTTTGCCTCAGCCACAGCTCCAACGCCCTAAAATCCCCTTTTCATCCACCTCGTTTTCCTCTCCTTCTACACCCTTTTTCCCTTCTTACCCCTCGTCTCCGCCGCCTCCGCCTCCGCCGCCGCCATCGACGGCGCTCCCCACCTTCCCAGCCAACATCTCCGCCCTTCTCTTCCCTCAACCCAGTTCCCCTTCTCATCACCTCCACCGCCACGTCTTCGCCATTGTCGTCTCTGTTTCCCTCTGTTTCTCTGTTCTGCTCCTTCTCCTTGCTCTGTTTTTCTACTTTCGGAGCCGGAACCGACGAATCTCTGTTTCTGAGAAGGGTTTCAGGACTGATAATCTCCGCCTTTATCCGCCGGATATTGACACTTCCGACGGCGTTCATAACCATAGAGCCTCTTCGGCTACCGGTTCGAAGTTTCTGTATCTTGGGTCTTTGGCTACTACGAGAGAGATTGAGGAAGAGGCTGCCGGAATCGTGGAGGACGGCGGCGGGATTGTGGAATCGGAGTCTCCGGTGAAAATGGGGTCGCCGGAGCTTAAGCCCCTTCCGCCGCTTCCTCGCCGGAATTTCGATGAAGATTATAGGAGAAACGGTAACGGAAACGACGACAATGGCGACGGCGGCGACGACGACGGTGAGGATTTCTTTTCGCCAAGAGGGTCTTCTTGTAGCGGGAAGGAGAATATGAGTTCTAGAAGGATGAGCCCTGTGAATTTTTTTCAAAATGTAGAAAGTGAAAATTTCTTGAGGAAAAGCTTTGATTCTAGTTTGAATTCTGGTTCTCGTTCTGTTTCTGTTCCTAATAGTCCTTCTCCGCCATTGATGTTGAGCCCCACGAGCTTGAGATCGAAGTCGCCGGACTCGATTATTAGATTCCCGGTTACTTTCCGGCCGTTGCCAACCCGTCCAGTACCGCCATTGGCGTCATTGTCCTCTGCTTCTTCATCGTTGGTAGGTTCGGGAAACACCAAGAACTCGCCCTTGAGGGAGGGTGATTTTTCGGAGCTGCATCGACAGTTTTCGAATGGTTTCGGGATGGATTACGAGCAAACATTGCCTGTGAAGCTGCCACCACAGCCGCCGCCACCACCACCTCCAATGTTTTGGGAGATTCCTCCATCAACCTCCATTCCCAACAAGGAGCCAAATCTAGGTCCACCGGTTCTGGCCGTGCCATCGAGGCCGATGCTCTCACCGAACATGGCTCATATGTCAGTGGGGGAGCAAGCAAACACCATTGAAGATGTGGAGGGAGTGGAAGAAAATTCAAAGCCGAAACTGAAGCCATTGCATTGGGACAAAGTTCGAACGAGCTCTGATCGAGCCATGGTTTGGGATCACATCAAGTCGAGCTCTTTTCAGCTGAATGAGGAAAGGATTGAATCACTTTTTATGGCGAATAGTAATAATTCAAATCTGATGAGCAAAGAAAATGTTGGAGTTCATCAAAACATGCCTTTTGGGAACCAAGAGAATCGAGTTCTTGATCCTAAGAAGTCTCAGAATATTGCAATTTTGTTGAGGGCTCTCAATGTCACCATTGAAGAAGTTTCTGAGGCTCTTCTAGAAGGAAATTCAGATACTTTGGGTACTGAACTGCTCGAAAGCTTGCTAAAAATGGCGCCAACCGAAGAAGAAGAACGTAATTTGAGAGAATACAAAGATGATTCGCCTTTTAAACTTGGCCCAGCTGAGAAATTTCTCAAGGTTGTTATTGATGTACCGTTTGCATTCAAGAGGGTTGATGCAATGCTCTACATTGCAAATTTCGATTCCGAGGTCGAGTACCTCTATCGATCCTTTGAAACTCTCGAGGCTGCTTGTAAAGAATTGAAAAACAGCAGAATGTTTCTCAAACTTCTTGAAGCAGTACTCAAAACTGGGAACCGGATGAACGTAGGCACAGACCGCGGTGATGCTCATGCCTTTAAACTCGACACTCTTCTGAAGCTCGTCGACATCAAAGGAACCGATGGAAAGACCACTCTCTTGCATTTCGTAGTGCAAGAGATTATTAGAACTGAAGGTCATCGACACTCCACCTCCTCCAATTACAACTCGACAGCTGATGACACTCAACAATCTTCCTTAACAAACGATGTCGAGTTTCGCAAGCTCGGTCTTCAAGTTGTTTCGGGTCTCAGCAGGGAGCTTTCAAGTGTAAAGAAAGCTGCATTAATGGATGCAGACATGCTTAGTAGCGATGTAACAAAACTCGCCGGAGGGATCACTAAAATCATCGAGGTTATTCGATTAAACGAAGACTTGTTGAAAGAACGGAGGAGGTTGAATTTCTCCAACTCAATGAACAGGTTCATGGGGAAGGCATCTGAAGAAATAGCAAGGTTGCAAGTCCAAGAGGGCATTGTTCTGTCAATGGTAAAGGAAATAACCGAATACTTCCATGGCAACTTAGCGAAAGAAGAAGCTCGACCGCTGCGTATTTTCATGGTGGTAAAGGAATTTCTAGCAATCTTAGATCAGGTATGCAAGGAAGTTGGAAGAAACAACGAAAGAACAATAGTCGGTTCAGCTCGTCAGTTTACAGGGCCTCCAAATCCATATCTTCCATCGATGTTCCCCGGATTATTCGAAAGTCGGCGGTATGGTTCGTCTGATGATGATAGCTCATCTTCCTCATCTTAG 2829 48.14 MGLFFFLSTMSLLPFLPFIPLFLSPHSAAAAGTHHRRLLHQPFFPWASMAPSQPPFPFSPLPQPQLQRPKIPFSSTSFSSPSTPFFPSYPSSPPPPPPPPPSTALPTFPANISALLFPQPSSPSHHLHRHVFAIVVSVSLCFSVLLLLLALFFYFRSRNRRISVSEKGFRTDNLRLYPPDIDTSDGVHNHRASSATGSKFLYLGSLATTREIEEEAAGIVEDGGGIVESESPVKMGSPELKPLPPLPRRNFDEDYRRNGNGNDDNGDGGDDDGEDFFSPRGSSCSGKENMSSRRMSPVNFFQNVESENFLRKSFDSSLNSGSRSVSVPNSPSPPLMLSPTSLRSKSPDSIIRFPVTFRPLPTRPVPPLASLSSASSSLVGSGNTKNSPLREGDFSELHRQFSNGFGMDYEQTLPVKLPPQPPPPPPPMFWEIPPSTSIPNKEPNLGPPVLAVPSRPMLSPNMAHMSVGEQANTIEDVEGVEENSKPKLKPLHWDKVRTSSDRAMVWDHIKSSSFQLNEERIESLFMANSNNSNLMSKENVGVHQNMPFGNQENRVLDPKKSQNIAILLRALNVTIEEVSEALLEGNSDTLGTELLESLLKMAPTEEEERNLREYKDDSPFKLGPAEKFLKVVIDVPFAFKRVDAMLYIANFDSEVEYLYRSFETLEAACKELKNSRMFLKLLEAVLKTGNRMNVGTDRGDAHAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRTEGHRHSTSSNYNSTADDTQQSSLTNDVEFRKLGLQVVSGLSRELSSVKKAALMDADMLSSDVTKLAGGITKIIEVIRLNEDLLKERRRLNFSNSMNRFMGKASEEIARLQVQEGIVLSMVKEITEYFHGNLAKEEARPLRIFMVVKEFLAILDQVCKEVGRNNERTIVGSARQFTGPPNPYLPSMFPGLFESRRYGSSDDDSSSSSS 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2340117 2344585 + Sed0006222.1 Sed06g0275 716818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0275 942 Pfam Formin Homology 2 Domain 481 887 IPR015425 -
Sed06g0275 942 MobiDBLite consensus disorder prediction 86 104 - -
Sed06g0275 942 MobiDBLite consensus disorder prediction 217 293 - -
Sed06g0275 942 Gene3D Formin, FH2 domain 480 899 IPR042201 -
Sed06g0275 942 SUPERFAMILY Formin homology 2 domain (FH2 domain) 418 900 - -
Sed06g0275 942 SMART it6_source 478 902 IPR015425 -
Sed06g0275 942 ProSiteProfiles Formin homology-2 (FH2) domain profile. 478 913 IPR015425 -
Sed06g0275 942 MobiDBLite consensus disorder prediction 371 390 - -
Sed06g0275 942 PANTHER FORMIN-RELATED 16 936 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Sed06g0275 942 MobiDBLite consensus disorder prediction 371 393 - -
Sed06g0275 942 MobiDBLite consensus disorder prediction 246 264 - -
Sed06g0275 942 MobiDBLite consensus disorder prediction 74 104 - -
Sed06g0275 942 MobiDBLite consensus disorder prediction 315 344 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0454 Sed-Chr1:3459637 Sed06g0275 Sed-Chr6:2340117 6.30E-138 dispersed
Sed04g0464 Sed-Chr4:3446046 Sed06g0275 Sed-Chr6:2340117 1.90E-102 dispersed
Sed04g0465 Sed-Chr4:3446046 Sed06g0275 Sed-Chr6:2340117 1.90E-102 dispersed
Sed05g0219 Sed-Chr5:1332627 Sed06g0275 Sed-Chr6:2340117 7.50E-161 dispersed
Sed06g0275 Sed-Chr6:2340117 Sed07g2651 Sed-Chr7:41953739 9.90E-94 dispersed
Sed06g0275 Sed-Chr6:2340117 Sed01g4182 Sed-Chr1:70429283 1.60E-160 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0275 K28090 - csv:101213912 1259.2