Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0284 ATGTCGCGTAAGGGTTTGATGGAGCAAGACTTAAAGAAATTGGATGTGACAAAGCTCCATCCACTTTCTCCTGAAGTTATATCTCGTCAAGCTACTATTAATATTGGTACTATTGGTCATGTCGCACATGGAAAATCTACCGTTGTAAAAGCAATTTCAGGAGTCCAGACTGTACGCTTTAAGAACGAGTTGGAGCGTAACATTACTATAAAATTGGGGTATGCCAATGCAAAGATATACAAATGTGAAGATGACAAGTGCCCTCGACCTATGTCCTACAAGGCTTATGGAAGTGGAAAGGAAGACACTCCTTTATGTGACGTGCCTGGGTTTGAAAATTGCAGGATGAAACTGTTGCGTCATGTATCCTTTGTTGACTGTCCGGGTCACGATATTCTTATGGCTACCATGCTTAATGGAGCAGCCATTATGGATGGAGCATTACTTTTGATAGCTGCCAACGAAAGCTGCCCTCAACCTCAAACATCTGAGCACCTTGCTGCTGTTGAAATTATGCGCCTTCAACATATTATAATCCTCCAGAATAAAGTAGATCTTATTCAAGAAAATGTTGCAATTAATCAACATGAAGCAATTCAAAAATTTATTCAGGGAACTGTTGCTGATGGTGCACCAGTAGTTCCAATCTCTGCTCAGCTGAAGTATAATATTGATGTTGTTTGCGAGTATATAGTGAAAAAGATTCCAATCCCTGAAAGGAATTTTGTCTCACCTCCTAATATGATAGTGATTCGTTCTTTTGATGTTAACAAACCTGGATTTGAAGTTGATGAGATCAAAGGTGGTGTGGCTGGTGGAAGCATATTAAGGGGTGTTTTGAAGGTGAATCAATTCATTGAAGTTCGTCCTGGGATTGTTGTTAAGGATGAAAGTGGTAACATCAAGTGCACCCCTATATACTCAAGGATTGTTTCTTTGTATGCGGAGCAAAATGAGCTCCAATTTGCAGTCCCTGGAGGTCTTATTGGGGTTGGCACAACAATGGATCCCACTTTGACTCGTGCTGACAGATTGGTCGGACAGGTTCTTGGAGAAGTTGGATCGCTTCCAGATGTTTTTGTTGAGCTAGAGGTAAACTTTTTCCTTCTGCGGCGGCTCCTTGGTGTGAGGACGAAAGGATCAGAAAGACAAGGAAAAGTGTCAAAGCTGGCCAAGGGAGAGATTCTAATGTTGAACATTGGATCCATGTCTACGGGAGCTAGAGTCGTTGCAGTAAAGAACGATTTAGCGAAGCTGCAGCTCACTTCTCCTGTCTGCACCAGCAAGGGGGAGAAGATTGCGCTAAGTCGCCGAGTCGAGAAGCACTGGCGTCTTATCGGCTGGGGTCAAATTCAAGCGGGAACGACCCTCGACGTACCGCCGTGCCCCATTTGA 1395 43.37 MSRKGLMEQDLKKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDKCPRPMSYKAYGSGKEDTPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIQKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFVSPPNMIVIRSFDVNKPGFEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPDVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKGEILMLNIGSMSTGARVVAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGTTLDVPPCPI 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2426395 2432663 + Sed0002672.1 Sed06g0284 716827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0284 464 CDD eIF2_gamma_II 241 354 IPR044127 GO:0000049(InterPro)
Sed06g0284 464 Pfam Elongation factor Tu domain 2 268 350 IPR004161 GO:0005525(InterPro)
Sed06g0284 464 Pfam Initiation factor eIF2 gamma, C terminal 362 451 IPR015256 -
Sed06g0284 464 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 4 459 IPR050543 GO:0000049(PANTHER)|GO:0001731(PANTHER)|GO:0003743(PANTHER)|GO:0005829(PANTHER)|GO:0005850(PANTHER)
Sed06g0284 464 FunFam Eukaryotic translation initiation factor 2 subunit gamma 357 456 - -
Sed06g0284 464 Pfam Elongation factor Tu GTP binding domain 32 236 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed06g0284 464 FunFam Eukaryotic translation initiation factor 2 subunit gamma 241 356 - -
Sed06g0284 464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 242 IPR027417 -
Sed06g0284 464 SUPERFAMILY Translation proteins 240 354 IPR009000 -
Sed06g0284 464 FunFam Eukaryotic translation initiation factor 2 subunit gamma 30 240 - -
Sed06g0284 464 CDD eIF2_gamma 33 240 IPR044128 GO:0005525(InterPro)
Sed06g0284 464 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 355 452 IPR009001 -
Sed06g0284 464 CDD eIF2_gamma_III 357 451 IPR015256 -
Sed06g0284 464 PRINTS GTP-binding elongation factor signature 34 47 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed06g0284 464 PRINTS GTP-binding elongation factor signature 139 150 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed06g0284 464 PRINTS GTP-binding elongation factor signature 123 133 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed06g0284 464 PRINTS GTP-binding elongation factor signature 177 186 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed06g0284 464 Gene3D Translation factors 242 356 - -
Sed06g0284 464 Gene3D Translation factors 357 456 - -
Sed06g0284 464 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 30 239 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed06g0284 464 Gene3D - 30 240 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0284 Sed-Chr6:2426395 Sed12g2481 Sed-Chr12:34379571 6.50E-14 dispersed
Sed06g0284 Sed-Chr6:2426395 Sed07g0396 Sed-Chr7:2981938 3.80E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0284 K03242 - csv:116403970 906.36