Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g0284 | ATGTCGCGTAAGGGTTTGATGGAGCAAGACTTAAAGAAATTGGATGTGACAAAGCTCCATCCACTTTCTCCTGAAGTTATATCTCGTCAAGCTACTATTAATATTGGTACTATTGGTCATGTCGCACATGGAAAATCTACCGTTGTAAAAGCAATTTCAGGAGTCCAGACTGTACGCTTTAAGAACGAGTTGGAGCGTAACATTACTATAAAATTGGGGTATGCCAATGCAAAGATATACAAATGTGAAGATGACAAGTGCCCTCGACCTATGTCCTACAAGGCTTATGGAAGTGGAAAGGAAGACACTCCTTTATGTGACGTGCCTGGGTTTGAAAATTGCAGGATGAAACTGTTGCGTCATGTATCCTTTGTTGACTGTCCGGGTCACGATATTCTTATGGCTACCATGCTTAATGGAGCAGCCATTATGGATGGAGCATTACTTTTGATAGCTGCCAACGAAAGCTGCCCTCAACCTCAAACATCTGAGCACCTTGCTGCTGTTGAAATTATGCGCCTTCAACATATTATAATCCTCCAGAATAAAGTAGATCTTATTCAAGAAAATGTTGCAATTAATCAACATGAAGCAATTCAAAAATTTATTCAGGGAACTGTTGCTGATGGTGCACCAGTAGTTCCAATCTCTGCTCAGCTGAAGTATAATATTGATGTTGTTTGCGAGTATATAGTGAAAAAGATTCCAATCCCTGAAAGGAATTTTGTCTCACCTCCTAATATGATAGTGATTCGTTCTTTTGATGTTAACAAACCTGGATTTGAAGTTGATGAGATCAAAGGTGGTGTGGCTGGTGGAAGCATATTAAGGGGTGTTTTGAAGGTGAATCAATTCATTGAAGTTCGTCCTGGGATTGTTGTTAAGGATGAAAGTGGTAACATCAAGTGCACCCCTATATACTCAAGGATTGTTTCTTTGTATGCGGAGCAAAATGAGCTCCAATTTGCAGTCCCTGGAGGTCTTATTGGGGTTGGCACAACAATGGATCCCACTTTGACTCGTGCTGACAGATTGGTCGGACAGGTTCTTGGAGAAGTTGGATCGCTTCCAGATGTTTTTGTTGAGCTAGAGGTAAACTTTTTCCTTCTGCGGCGGCTCCTTGGTGTGAGGACGAAAGGATCAGAAAGACAAGGAAAAGTGTCAAAGCTGGCCAAGGGAGAGATTCTAATGTTGAACATTGGATCCATGTCTACGGGAGCTAGAGTCGTTGCAGTAAAGAACGATTTAGCGAAGCTGCAGCTCACTTCTCCTGTCTGCACCAGCAAGGGGGAGAAGATTGCGCTAAGTCGCCGAGTCGAGAAGCACTGGCGTCTTATCGGCTGGGGTCAAATTCAAGCGGGAACGACCCTCGACGTACCGCCGTGCCCCATTTGA | 1395 | 43.37 | MSRKGLMEQDLKKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDKCPRPMSYKAYGSGKEDTPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIQKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFVSPPNMIVIRSFDVNKPGFEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPDVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKGEILMLNIGSMSTGARVVAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGTTLDVPPCPI | 464 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2426395 | 2432663 | + | Sed0002672.1 | Sed06g0284 | 716827 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g0284 | 464 | CDD | eIF2_gamma_II | 241 | 354 | IPR044127 | GO:0000049(InterPro) | |
Sed06g0284 | 464 | Pfam | Elongation factor Tu domain 2 | 268 | 350 | IPR004161 | GO:0005525(InterPro) | |
Sed06g0284 | 464 | Pfam | Initiation factor eIF2 gamma, C terminal | 362 | 451 | IPR015256 | - | |
Sed06g0284 | 464 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER | 4 | 459 | IPR050543 | GO:0000049(PANTHER)|GO:0001731(PANTHER)|GO:0003743(PANTHER)|GO:0005829(PANTHER)|GO:0005850(PANTHER) | |
Sed06g0284 | 464 | FunFam | Eukaryotic translation initiation factor 2 subunit gamma | 357 | 456 | - | - | |
Sed06g0284 | 464 | Pfam | Elongation factor Tu GTP binding domain | 32 | 236 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed06g0284 | 464 | FunFam | Eukaryotic translation initiation factor 2 subunit gamma | 241 | 356 | - | - | |
Sed06g0284 | 464 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 23 | 242 | IPR027417 | - | |
Sed06g0284 | 464 | SUPERFAMILY | Translation proteins | 240 | 354 | IPR009000 | - | |
Sed06g0284 | 464 | FunFam | Eukaryotic translation initiation factor 2 subunit gamma | 30 | 240 | - | - | |
Sed06g0284 | 464 | CDD | eIF2_gamma | 33 | 240 | IPR044128 | GO:0005525(InterPro) | |
Sed06g0284 | 464 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 355 | 452 | IPR009001 | - | |
Sed06g0284 | 464 | CDD | eIF2_gamma_III | 357 | 451 | IPR015256 | - | |
Sed06g0284 | 464 | PRINTS | GTP-binding elongation factor signature | 34 | 47 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed06g0284 | 464 | PRINTS | GTP-binding elongation factor signature | 139 | 150 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed06g0284 | 464 | PRINTS | GTP-binding elongation factor signature | 123 | 133 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed06g0284 | 464 | PRINTS | GTP-binding elongation factor signature | 177 | 186 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed06g0284 | 464 | Gene3D | Translation factors | 242 | 356 | - | - | |
Sed06g0284 | 464 | Gene3D | Translation factors | 357 | 456 | - | - | |
Sed06g0284 | 464 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 30 | 239 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed06g0284 | 464 | Gene3D | - | 30 | 240 | IPR027417 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g0284 | Sed-Chr6:2426395 | Sed12g2481 | Sed-Chr12:34379571 | 6.50E-14 | dispersed | |
Sed06g0284 | Sed-Chr6:2426395 | Sed07g0396 | Sed-Chr7:2981938 | 3.80E-14 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g0284 | K03242 | - | csv:116403970 | 906.36 |