Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g0293 | ATGGCGGCTTCTTCTTCATCCGTTCCACTTTTCGGAGTTCGAGAAGAGTCTCAGATGAGAACTCAACCACAACAACAACAACAACAGCAACAACAACAACAACAATCTAATTCTACGACCGCTCAACCCCCGAAGAAAAAGAGGAACCAACCCGGAACTCCATATCCGGATGCGGAGGTGATAGCGTTGAGTCCAAAGACGCTAATGGCGACGAATAGATTCATATGCGAAGTCTGCAACAAAGGGTTTCAAAGAGAGCAAAACCTACAACTTCATAGAAGAGGTCACAATTTGCCATGGAAGCTAAAGCAAAAAAGCACCAAAGAGCCAAAGAGAAAGGTTTATTTATGCCCAGAACCCACATGTGTTCATCACAGCCCTTCCAGGGCTCTCGGGGATCTAACCGGCATAAAAAAACACTACTCCAGAAAGCACGGCGAGAAGAAGTGGAAGTGCGATAAGTGCTCGAAGCGCTACGCCGTTCAATCCGACTGGAAAGCTCATTCCAAAACCTGTGGCACCCGAGAGTACCGCTGCGATTGCGGTACCCTCTTCTCTAGAAGGGACAGTTTCATTACTCATAGAGCATTTTGTGATGCATTGGCTCAAGAAAGTGCAAGGCACCCTCCAAATTTAGGGTCAGCAATTGGAGGGCATTTATATGGAGGTAATAGCAATGTGGGGTTGACATTATCACAAGTTCCTCAAATTTCTTCTCTTCATGACCATCCTAATATCTCCCAATCGGCTCACGACGTCCTCCGCCTCGGCGGAGCACGTCCTGGGCAGTTCTCTCATCTCCTCCCTCCTTCCATGGGCTCGTCCTTTCGTCCCCCGATGCCGCAGGCAATGCCGTCGTCTGGAGCGGCCGTGTTCTTTATGAACGATGGGACGAACCCGAATAGCTTCCATGAAGATCATCAAAGCCAATCTCAAGGGTTGTTTGGAAATAAGGCATTTCATGGGTTGATGCAATTTTCGGATATGCAAAGCCATTCGAATAGTAACAATAGCAACAACAATAATCTCTTCAATTTGGGATTCATTTCAAATCCAACTGGTGATGCGACAACCAATGTGAACAACAACAACCCTAATAATAACAACAACAACACCAATAGTAACAACAATCTTCAATCGTCGTTGCTAAATCAATTCGGTGTCGGTGGCACAAACAATGACGGTTTCGGCGTGAACATAATGGGGGATCAAATCAATTCTGCAACCGTCCCATCTCTCTACAGCAACGCCACGGGAGTTGGCGGTAGCAATACGGGCGGAGCAATGCAACACATGTCTGCAACGGCACTTCTCCAAAAGGCAGCTCAATTAGGCTCAACAACATCAAGTAGTAACACCACAGCCACATTATTGAGAACGTTCGGAAGCTCCTCAACCTCAGGCGGGAAGGCATCCGATAGGACGCTTTTCCCGCCAAGCTATGGTGGATTCGATAACGAGAGCAATCTCCAAGACCTAATGAACTCATTCACCAACGGGAGCTCCGCAGGCGGGCTGTTCAGCGGCGGGATGAGCTCGTTTGGCGTATTCGATCGAACAAACATGGAATCATTGGAGGATCCAAAGCTACAACAAAATCTAAGCGCAGTCAGCATGGGAGGGACAGATAGGTTAACAAGAGACTTTCTAGGCGTTGGACAGATCGTAAGAAGTATGAGCGGGAGTGGCGGTGGCGGTTATTCGACGAGAGAACATAAACAACCGTCACAAGGGATAGTTATGGAAGGAAATGAAAGCAATTCAGCGCCGTCAAGCCAAGCTTTTGGTGGTGGAAATGGAAACTACCAGTGA | 1812 | 47.63 | MAASSSSVPLFGVREESQMRTQPQQQQQQQQQQQQSNSTTAQPPKKKRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHSPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPPNLGSAIGGHLYGGNSNVGLTLSQVPQISSLHDHPNISQSAHDVLRLGGARPGQFSHLLPPSMGSSFRPPMPQAMPSSGAAVFFMNDGTNPNSFHEDHQSQSQGLFGNKAFHGLMQFSDMQSHSNSNNSNNNNLFNLGFISNPTGDATTNVNNNNPNNNNNNTNSNNNLQSSLLNQFGVGGTNNDGFGVNIMGDQINSATVPSLYSNATGVGGSNTGGAMQHMSATALLQKAAQLGSTTSSSNTTATLLRTFGSSSTSGGKASDRTLFPPSYGGFDNESNLQDLMNSFTNGSSAGGLFSGGMSSFGVFDRTNMESLEDPKLQQNLSAVSMGGTDRLTRDFLGVGQIVRSMSGSGGGGYSTREHKQPSQGIVMEGNESNSAPSSQAFGGGNGNYQ | 603 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2540922 | 2546098 | + | Sed0004168.1 | Sed06g0293 | 716836 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g0293 | 603 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
Sed06g0293 | 603 | SUPERFAMILY | beta-beta-alpha zinc fingers | 73 | 170 | IPR036236 | - | |
Sed06g0293 | 603 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 27 | 569 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Sed06g0293 | 603 | MobiDBLite | consensus disorder prediction | 17 | 47 | - | - | |
Sed06g0293 | 603 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 176 | 211 | - | - | |
Sed06g0293 | 603 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 149 | 173 | - | - | |
Sed06g0293 | 603 | MobiDBLite | consensus disorder prediction | 561 | 603 | - | - | |
Sed06g0293 | 603 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 128 | 207 | - | - | |
Sed06g0293 | 603 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 76 | 96 | IPR013087 | - | |
Sed06g0293 | 603 | Gene3D | Classic Zinc Finger | 57 | 122 | - | - | |
Sed06g0293 | 603 | SMART | c2h2final6 | 150 | 170 | IPR013087 | - | |
Sed06g0293 | 603 | SMART | c2h2final6 | 74 | 96 | IPR013087 | - | |
Sed06g0293 | 603 | SMART | c2h2final6 | 115 | 145 | IPR013087 | - | |
Sed06g0293 | 603 | MobiDBLite | consensus disorder prediction | 355 | 378 | - | - | |
Sed06g0293 | 603 | Gene3D | Classic Zinc Finger | 128 | 207 | - | - | |
Sed06g0293 | 603 | Pfam | Zinc-finger of C2H2 type | 74 | 96 | IPR013087 | - | |
Sed06g0293 | 603 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 74 | 96 | IPR013087 | - | |
Sed06g0293 | 603 | MobiDBLite | consensus disorder prediction | 560 | 603 | - | - | |
Sed06g0293 | 603 | FunFam | protein indeterminate-domain 12-like | 53 | 121 | - | - | |
Sed06g0293 | 603 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 111 | 145 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g0293 | Sed-Chr6:2540922 | Sed13g1864 | Sed-Chr13:23640561 | 7.20E-82 | dispersed | |
Sed06g0293 | Sed-Chr6:2540922 | Sed07g0446 | Sed-Chr7:3325701 | 2.30E-83 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38794 | PF12171 | zf-C2H2_jaz | 3.70E-05 | CL0361 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g0293 | K25870 | - | csv:101219959 | 886.33 |