Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0293 ATGGCGGCTTCTTCTTCATCCGTTCCACTTTTCGGAGTTCGAGAAGAGTCTCAGATGAGAACTCAACCACAACAACAACAACAACAGCAACAACAACAACAACAATCTAATTCTACGACCGCTCAACCCCCGAAGAAAAAGAGGAACCAACCCGGAACTCCATATCCGGATGCGGAGGTGATAGCGTTGAGTCCAAAGACGCTAATGGCGACGAATAGATTCATATGCGAAGTCTGCAACAAAGGGTTTCAAAGAGAGCAAAACCTACAACTTCATAGAAGAGGTCACAATTTGCCATGGAAGCTAAAGCAAAAAAGCACCAAAGAGCCAAAGAGAAAGGTTTATTTATGCCCAGAACCCACATGTGTTCATCACAGCCCTTCCAGGGCTCTCGGGGATCTAACCGGCATAAAAAAACACTACTCCAGAAAGCACGGCGAGAAGAAGTGGAAGTGCGATAAGTGCTCGAAGCGCTACGCCGTTCAATCCGACTGGAAAGCTCATTCCAAAACCTGTGGCACCCGAGAGTACCGCTGCGATTGCGGTACCCTCTTCTCTAGAAGGGACAGTTTCATTACTCATAGAGCATTTTGTGATGCATTGGCTCAAGAAAGTGCAAGGCACCCTCCAAATTTAGGGTCAGCAATTGGAGGGCATTTATATGGAGGTAATAGCAATGTGGGGTTGACATTATCACAAGTTCCTCAAATTTCTTCTCTTCATGACCATCCTAATATCTCCCAATCGGCTCACGACGTCCTCCGCCTCGGCGGAGCACGTCCTGGGCAGTTCTCTCATCTCCTCCCTCCTTCCATGGGCTCGTCCTTTCGTCCCCCGATGCCGCAGGCAATGCCGTCGTCTGGAGCGGCCGTGTTCTTTATGAACGATGGGACGAACCCGAATAGCTTCCATGAAGATCATCAAAGCCAATCTCAAGGGTTGTTTGGAAATAAGGCATTTCATGGGTTGATGCAATTTTCGGATATGCAAAGCCATTCGAATAGTAACAATAGCAACAACAATAATCTCTTCAATTTGGGATTCATTTCAAATCCAACTGGTGATGCGACAACCAATGTGAACAACAACAACCCTAATAATAACAACAACAACACCAATAGTAACAACAATCTTCAATCGTCGTTGCTAAATCAATTCGGTGTCGGTGGCACAAACAATGACGGTTTCGGCGTGAACATAATGGGGGATCAAATCAATTCTGCAACCGTCCCATCTCTCTACAGCAACGCCACGGGAGTTGGCGGTAGCAATACGGGCGGAGCAATGCAACACATGTCTGCAACGGCACTTCTCCAAAAGGCAGCTCAATTAGGCTCAACAACATCAAGTAGTAACACCACAGCCACATTATTGAGAACGTTCGGAAGCTCCTCAACCTCAGGCGGGAAGGCATCCGATAGGACGCTTTTCCCGCCAAGCTATGGTGGATTCGATAACGAGAGCAATCTCCAAGACCTAATGAACTCATTCACCAACGGGAGCTCCGCAGGCGGGCTGTTCAGCGGCGGGATGAGCTCGTTTGGCGTATTCGATCGAACAAACATGGAATCATTGGAGGATCCAAAGCTACAACAAAATCTAAGCGCAGTCAGCATGGGAGGGACAGATAGGTTAACAAGAGACTTTCTAGGCGTTGGACAGATCGTAAGAAGTATGAGCGGGAGTGGCGGTGGCGGTTATTCGACGAGAGAACATAAACAACCGTCACAAGGGATAGTTATGGAAGGAAATGAAAGCAATTCAGCGCCGTCAAGCCAAGCTTTTGGTGGTGGAAATGGAAACTACCAGTGA 1812 47.63 MAASSSSVPLFGVREESQMRTQPQQQQQQQQQQQQSNSTTAQPPKKKRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHSPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPPNLGSAIGGHLYGGNSNVGLTLSQVPQISSLHDHPNISQSAHDVLRLGGARPGQFSHLLPPSMGSSFRPPMPQAMPSSGAAVFFMNDGTNPNSFHEDHQSQSQGLFGNKAFHGLMQFSDMQSHSNSNNSNNNNLFNLGFISNPTGDATTNVNNNNPNNNNNNTNSNNNLQSSLLNQFGVGGTNNDGFGVNIMGDQINSATVPSLYSNATGVGGSNTGGAMQHMSATALLQKAAQLGSTTSSSNTTATLLRTFGSSSTSGGKASDRTLFPPSYGGFDNESNLQDLMNSFTNGSSAGGLFSGGMSSFGVFDRTNMESLEDPKLQQNLSAVSMGGTDRLTRDFLGVGQIVRSMSGSGGGGYSTREHKQPSQGIVMEGNESNSAPSSQAFGGGNGNYQ 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2540922 2546098 + Sed0004168.1 Sed06g0293 716836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0293 603 MobiDBLite consensus disorder prediction 1 58 - -
Sed06g0293 603 SUPERFAMILY beta-beta-alpha zinc fingers 73 170 IPR036236 -
Sed06g0293 603 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 569 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed06g0293 603 MobiDBLite consensus disorder prediction 17 47 - -
Sed06g0293 603 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 176 211 - -
Sed06g0293 603 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 149 173 - -
Sed06g0293 603 MobiDBLite consensus disorder prediction 561 603 - -
Sed06g0293 603 FunFam protein indeterminate-domain 5, chloroplastic-like 128 207 - -
Sed06g0293 603 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Sed06g0293 603 Gene3D Classic Zinc Finger 57 122 - -
Sed06g0293 603 SMART c2h2final6 150 170 IPR013087 -
Sed06g0293 603 SMART c2h2final6 74 96 IPR013087 -
Sed06g0293 603 SMART c2h2final6 115 145 IPR013087 -
Sed06g0293 603 MobiDBLite consensus disorder prediction 355 378 - -
Sed06g0293 603 Gene3D Classic Zinc Finger 128 207 - -
Sed06g0293 603 Pfam Zinc-finger of C2H2 type 74 96 IPR013087 -
Sed06g0293 603 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
Sed06g0293 603 MobiDBLite consensus disorder prediction 560 603 - -
Sed06g0293 603 FunFam protein indeterminate-domain 12-like 53 121 - -
Sed06g0293 603 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 111 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0293 Sed-Chr6:2540922 Sed13g1864 Sed-Chr13:23640561 7.20E-82 dispersed
Sed06g0293 Sed-Chr6:2540922 Sed07g0446 Sed-Chr7:3325701 2.30E-83 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38794 PF12171 zf-C2H2_jaz 3.70E-05 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0293 K25870 - csv:101219959 886.33