Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0306 ATGGCTAATTCATTCAAGAATTTGATTCTTTTGTTAGCTATTTGGGCTGTTTTTGACCGAGCCATGGCCTCTAGGCTGGTTCCTATTGATCAAAGCGTCGATAATACATGGTACGATGCCCGTGCCACTTTCTATGGCGACATGACAGGTGGCGAAACTATGCAGGGAGCATGTGGGTACGGGAACCTGTTCGAGCAAGGGTATGGCCTCGCTACTGCAGCGCTAAGCACGGCGCTGTTCAATGATGGTGGAGCTTGCGGAGCATGTTTCGAGATAATGTGCATGAACGATGAATATAACTGGTGCATACCAAACGCAGGCACAATCAAAATAACAGCAACAAACTTCTGCCCACCAAACTATACAAAAACACATGACATTTGGTGCAATCCGCCCCAACGCCATTTTGACTTGTCTCTCTATATGTTCACCAAAATGGCTCCTTATAGGGCTGGTGTCATCCAGGTCCGCTATCGAAGGATACTCTGCCAAAAAATCGGCGGCCTTCGATTCGAGCTCAATGGGAACCCCAATTGGCTATTGGTTTTGGTATTCAACGTTGGTGGTGCGGGTGACGTTGTTGATGTTAAAATTAAAGGGCATGCCACTAACTGGATCCAAATGTCTAGGAATTGGGGGCAAAATTGGCAGGTCGGTACCGTGTTGGTGGGACAAACCTTGTCGTTTCAAGTCACCACTAGTGACCGTAGGATGATTGAGTTTGATGATGTTGTACCAAGTAATTGGCAGTTTGGCCAGACTTTTGATGGCAAGTCTAACTTCTAA 786 46.56 MANSFKNLILLLAIWAVFDRAMASRLVPIDQSVDNTWYDARATFYGDMTGGETMQGACGYGNLFEQGYGLATAALSTALFNDGGACGACFEIMCMNDEYNWCIPNAGTIKITATNFCPPNYTKTHDIWCNPPQRHFDLSLYMFTKMAPYRAGVIQVRYRRILCQKIGGLRFELNGNPNWLLVLVFNVGGAGDVVDVKIKGHATNWIQMSRNWGQNWQVGTVLVGQTLSFQVTTSDRRMIEFDDVVPSNWQFGQTFDGKSNF 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2703368 2704318 - Sed0006235.1 Sed06g0306 716849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0306 261 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576(InterPro)
Sed06g0306 261 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576(InterPro)
Sed06g0306 261 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576(InterPro)
Sed06g0306 261 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576(InterPro)
Sed06g0306 261 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576(InterPro)
Sed06g0306 261 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576(InterPro)
Sed06g0306 261 SUPERFAMILY Barwin-like endoglucanases 36 186 IPR036908 -
Sed06g0306 261 CDD DPBB_EXPA_N 37 163 - -
Sed06g0306 261 PANTHER EXPANSIN-A15 20 259 IPR002963 GO:0009664(InterPro)
Sed06g0306 261 Pfam Expansin C-terminal domain 170 246 IPR007117 -
Sed06g0306 261 PRINTS Expansin signature 95 106 IPR002963 GO:0009664(InterPro)
Sed06g0306 261 PRINTS Expansin signature 143 156 IPR002963 GO:0009664(InterPro)
Sed06g0306 261 PRINTS Expansin signature 167 179 IPR002963 GO:0009664(InterPro)
Sed06g0306 261 PRINTS Expansin signature 243 259 IPR002963 GO:0009664(InterPro)
Sed06g0306 261 PRINTS Expansin signature 67 81 IPR002963 GO:0009664(InterPro)
Sed06g0306 261 PRINTS Expansin signature 126 143 IPR002963 GO:0009664(InterPro)
Sed06g0306 261 PRINTS Expansin signature 214 235 IPR002963 GO:0009664(InterPro)
Sed06g0306 261 PRINTS Expansin signature 109 119 IPR002963 GO:0009664(InterPro)
Sed06g0306 261 PRINTS Expansin signature 179 200 IPR002963 GO:0009664(InterPro)
Sed06g0306 261 Gene3D - 23 164 IPR036908 -
Sed06g0306 261 Gene3D - 168 261 IPR036749 -
Sed06g0306 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 168 IPR007112 -
Sed06g0306 261 SUPERFAMILY PHL pollen allergen 167 257 IPR036749 -
Sed06g0306 261 SMART dpbb_1 72 158 IPR007112 -
Sed06g0306 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 257 IPR007117 -
Sed06g0306 261 Pfam Lytic transglycolase 72 158 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0306 Sed-Chr6:2703368 Sed06g1474 Sed-Chr6:39493423 4.80E-123 dispersed
Sed06g0306 Sed-Chr6:2703368 Sed14g0493 Sed-Chr14:4867194 8.50E-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0306 - - - 0.0