Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0316 ATGGATAGTGGAGGTCAACTCAAAGTTGCTGGATTTGGCTTGATAAGATTGTCAAAAATGTCTTATGGCAAAGCAAAACTAGCTAAGCCTGTGGTGACTGACTATTCGAATATGTACTTAGCACCCGAGATTTACAACGATGAAATATTCAACAGAAGCGTCGATGCATTTTCGTTCGGTCTCATTCTGTACGAGATGCTTGAAGGTGTTCAACCATTCCATCCCAAGTCTCCAGAAGAGGTTTCAAAAGCTATTTGTGTGGAAGGAAAGAGACCTCAATTTAAGAATAAATTGAAAAGTTATCCACCTGATCTAAAAGAATTGATTGAAGAATGCTGGGATCCAAAACCTGTTGCAAGGCCTACTTTCTCTGAAATTATTGCAAGGTTGGATAAAATAGTTACCAACTGCTCAAAACATGGATGGTGGAAAGACCCTTTTAAACTTCGCTGGTAA 456 39.04 MDSGGQLKVAGFGLIRLSKMSYGKAKLAKPVVTDYSNMYLAPEIYNDEIFNRSVDAFSFGLILYEMLEGVQPFHPKSPEEVSKAICVEGKRPQFKNKLKSYPPDLKELIEECWDPKPVARPTFSEIIARLDKIVTNCSKHGWWKDPFKLRW 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2840414 2842922 - Sed0008199.1 Sed06g0316 716859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0316 151 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 4 131 IPR051681 GO:0004674(PANTHER)
Sed06g0316 151 Gene3D Transferase(Phosphotransferase) domain 1 1 145 - -
Sed06g0316 151 ProSiteProfiles Protein kinase domain profile. 1 143 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0316 151 Pfam Protein tyrosine and serine/threonine kinase 4 130 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g0316 151 SUPERFAMILY Protein kinase-like (PK-like) 2 137 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0316 Sed-Chr6:2840414 Sed10g1804 Sed-Chr10:35069399 3.40E-73 dispersed
Sed06g0316 Sed-Chr6:2840414 Sed01g0721 Sed-Chr1:5294382 5.90E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79335 PF07714 PK_Tyr_Ser-Thr 3.30E-19 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0316 - - - 0.0