Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0317 ATGGACAACATAACCACCCAATTGAAGAGAGGAATTTCCCGCCAATTCTCCACCGGCTCTCTCCGCCGAGCTCTAAGCCGCCAATTCTCCCGCCAATCCTCATTCGACCCACGACGGAACAATGCAAGATTCAGCTTCGGCAGGCAGTCCTCTCTCGACCCGCTTCGTCGCAGTCCCCACGACGAAACCGAGCTAGCCGTCCCTGACAATTTGGACTCCACGATACAGCTTCTCTTTATGGCCTGCCACGCCGACTTGAGAGGCGTTGAGGATTTGCTCGACGGCGGCACCGACGTCAATAGCATCGACTTGGATGGTCGTACTGCCTTGCATATTGCTGCCTGCGAGGGCCATATTGATGTCGTTAAGCTATTGCTAATCCGCAAGGCTAATATTGATGCTCGCGATCGTTGGGGCAGTACGGCTGCTGCTGATGCCAAGTATTATGGGAATATTGAGATTTACAACATTCTAAAGGCTCGTGGAGCTAAAACTCCGAAATCAAGGAAGACACCAATGACAGTTGCAAATCCTAGGGAAGTTCCTGAGTATGAGCTAAATCCATTGGAGCTTCAGATTAGAAGAAGTGATGGGTACATATCAAGTTGCTAA 612 50.49 MDNITTQLKRGISRQFSTGSLRRALSRQFSRQSSFDPRRNNARFSFGRQSSLDPLRRSPHDETELAVPDNLDSTIQLLFMACHADLRGVEDLLDGGTDVNSIDLDGRTALHIAACEGHIDVVKLLLIRKANIDARDRWGSTAAADAKYYGNIEIYNILKARGAKTPKSRKTPMTVANPREVPEYELNPLELQIRRSDGYISSC 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2845128 2846375 - Sed0004538.1 Sed06g0317 716860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0317 203 ProSiteProfiles Ankyrin repeat region circular profile. 105 137 - -
Sed06g0317 203 Pfam Ankyrin repeats (3 copies) 79 164 IPR002110 GO:0005515(InterPro)
Sed06g0317 203 ProSiteProfiles Ankyrin repeat profile. 105 137 IPR002110 GO:0005515(InterPro)
Sed06g0317 203 FunFam Integrin-linked protein kinase 1 47 184 - -
Sed06g0317 203 MobiDBLite consensus disorder prediction 28 52 - -
Sed06g0317 203 MobiDBLite consensus disorder prediction 28 61 - -
Sed06g0317 203 SUPERFAMILY Ankyrin repeat 75 176 IPR036770 -
Sed06g0317 203 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN 77 168 IPR050776 -
Sed06g0317 203 SMART ANK_2a 72 101 IPR002110 GO:0005515(InterPro)
Sed06g0317 203 SMART ANK_2a 105 134 IPR002110 GO:0005515(InterPro)
Sed06g0317 203 SMART ANK_2a 138 167 IPR002110 GO:0005515(InterPro)
Sed06g0317 203 Gene3D - 34 185 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0317 Sed-Chr6:2845128 Sed10g1804 Sed-Chr10:35069399 6.90E-45 dispersed
Sed06g0317 Sed-Chr6:2845128 Sed01g0721 Sed-Chr1:5294382 1.60E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0317 - - - 0.0