Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g0323 | ATGGATCAATCAGAGCGTTCTCAGTGCGGTGTCGGTGCCGGACAATTACCGTATTCTAATCCATACGAAACAACGCCAATGGCCGCTTCCGAAATGCCTGCAATTACGATTCCCCCGACTCAGCAACCGTCCAGTTTCTCTAATTCTCCACACCAGCTTGCCTATCAGCAGGCTCAGCACTTCCACCACCAGCAGCAACAACAGCTGCAAATGTTTTGGGAAAACCAAATGCAAGAGGCTGAACAAACAACTGACTTTAAGAACCACAGTCTACCCCTTGCTCGAATCAAGAAAATAATGAAAGCGGATGAAGACGTCCGAATGATTTCAGCTGAAGCACCCGTTATATTTGCAAAGGCGTGCGAAATGTTCATCTTGGAGTTGACTCTGCGATCTTGGATTCATACCGAAGAGAACAAAAGAAGAACTTTACAAAAGAATGATATTGCAGCAGCCATTTCAAGGACTGATGTCTTCGATTTCTTGGTTGATATCATTCCTAGAGATGAACTAAAAGAGGAAGGACTCGGAATCACGAAAGCCTCGATTCCCGTAGTTGGTTCCCCTGCCGATCTTCCTTATTACTATGTTCCATCGCAGCATCCGAACATGTTCGGTGCCACTGCTCAACAGCCCCGACCACCAATGATGCCTTTTATGTCATGGCCACATGCTCAATCGACACAGCAGCAACAAACGCAGCAGCAAAGTGATGCATAG | 720 | 46.53 | MDQSERSQCGVGAGQLPYSNPYETTPMAASEMPAITIPPTQQPSSFSNSPHQLAYQQAQHFHHQQQQQLQMFWENQMQEAEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADLPYYYVPSQHPNMFGATAQQPRPPMMPFMSWPHAQSTQQQQTQQQSDA | 239 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2868633 | 2871990 | + | Sed0003472.6 | Sed06g0323 | 716866 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g0323 | 239 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Sed06g0323 | 239 | MobiDBLite | consensus disorder prediction | 220 | 239 | - | - | |
Sed06g0323 | 239 | Gene3D | Histone, subunit A | 53 | 168 | IPR009072 | GO:0046982(InterPro) | |
Sed06g0323 | 239 | Pfam | Core histone H2A/H2B/H3/H4 | 50 | 153 | IPR007125 | GO:0003677(InterPro) | |
Sed06g0323 | 239 | Coils | Coil | 63 | 83 | - | - | |
Sed06g0323 | 239 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 62 | 224 | IPR050568 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER) | |
Sed06g0323 | 239 | FunFam | Nuclear transcription factor Y subunit gamma | 57 | 168 | - | - | |
Sed06g0323 | 239 | MobiDBLite | consensus disorder prediction | 222 | 239 | - | - | |
Sed06g0323 | 239 | SUPERFAMILY | Histone-fold | 60 | 162 | IPR009072 | GO:0046982(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g0321 | Sed-Chr6:2868633 | Sed06g0323 | Sed-Chr6:2868633 | 1.80E-132 | dispersed | |
Sed06g0323 | Sed-Chr6:2868633 | Sed06g0325 | Sed-Chr6:2868633 | 1.80E-132 | dispersed | |
Sed06g0322 | Sed-Chr6:2868633 | Sed06g0323 | Sed-Chr6:2868633 | 1.80E-132 | tandem | |
Sed06g0323 | Sed-Chr6:2868633 | Sed06g0324 | Sed-Chr6:2868633 | 1.80E-132 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38805 | PF00125 | Histone | 9.40E-18 | CL0012 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g0323 | K08066 | - | csv:101213813 | 357.836 |