Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0323 ATGGATCAATCAGAGCGTTCTCAGTGCGGTGTCGGTGCCGGACAATTACCGTATTCTAATCCATACGAAACAACGCCAATGGCCGCTTCCGAAATGCCTGCAATTACGATTCCCCCGACTCAGCAACCGTCCAGTTTCTCTAATTCTCCACACCAGCTTGCCTATCAGCAGGCTCAGCACTTCCACCACCAGCAGCAACAACAGCTGCAAATGTTTTGGGAAAACCAAATGCAAGAGGCTGAACAAACAACTGACTTTAAGAACCACAGTCTACCCCTTGCTCGAATCAAGAAAATAATGAAAGCGGATGAAGACGTCCGAATGATTTCAGCTGAAGCACCCGTTATATTTGCAAAGGCGTGCGAAATGTTCATCTTGGAGTTGACTCTGCGATCTTGGATTCATACCGAAGAGAACAAAAGAAGAACTTTACAAAAGAATGATATTGCAGCAGCCATTTCAAGGACTGATGTCTTCGATTTCTTGGTTGATATCATTCCTAGAGATGAACTAAAAGAGGAAGGACTCGGAATCACGAAAGCCTCGATTCCCGTAGTTGGTTCCCCTGCCGATCTTCCTTATTACTATGTTCCATCGCAGCATCCGAACATGTTCGGTGCCACTGCTCAACAGCCCCGACCACCAATGATGCCTTTTATGTCATGGCCACATGCTCAATCGACACAGCAGCAACAAACGCAGCAGCAAAGTGATGCATAG 720 46.53 MDQSERSQCGVGAGQLPYSNPYETTPMAASEMPAITIPPTQQPSSFSNSPHQLAYQQAQHFHHQQQQQLQMFWENQMQEAEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADLPYYYVPSQHPNMFGATAQQPRPPMMPFMSWPHAQSTQQQQTQQQSDA 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2868633 2871990 + Sed0003472.6 Sed06g0323 716866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0323 239 MobiDBLite consensus disorder prediction 1 20 - -
Sed06g0323 239 MobiDBLite consensus disorder prediction 220 239 - -
Sed06g0323 239 Gene3D Histone, subunit A 53 168 IPR009072 GO:0046982(InterPro)
Sed06g0323 239 Pfam Core histone H2A/H2B/H3/H4 50 153 IPR007125 GO:0003677(InterPro)
Sed06g0323 239 Coils Coil 63 83 - -
Sed06g0323 239 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 62 224 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Sed06g0323 239 FunFam Nuclear transcription factor Y subunit gamma 57 168 - -
Sed06g0323 239 MobiDBLite consensus disorder prediction 222 239 - -
Sed06g0323 239 SUPERFAMILY Histone-fold 60 162 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0321 Sed-Chr6:2868633 Sed06g0323 Sed-Chr6:2868633 1.80E-132 dispersed
Sed06g0323 Sed-Chr6:2868633 Sed06g0325 Sed-Chr6:2868633 1.80E-132 dispersed
Sed06g0322 Sed-Chr6:2868633 Sed06g0323 Sed-Chr6:2868633 1.80E-132 tandem
Sed06g0323 Sed-Chr6:2868633 Sed06g0324 Sed-Chr6:2868633 1.80E-132 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38805 PF00125 Histone 9.40E-18 CL0012 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0323 K08066 - csv:101213813 357.836