Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0346 ATGGCTTCATTTCATGTACAAGATTCTGAGTCTGGCAGTGCTGTTGATTATGCTCAACGAGGTCAGTGGCTCCGAGCAGCTATTCTCGGGGCCAACGACGGGCTCGTCTCCGTTGCGTCGCTCATGATGGGTGTTGGAGCTGTTAAGCCCGATGCGAAAGCCATGCTTATCGCTGGATTTGCAGGGCTCGTTGCGGGGGCATGCAGCATGGCGATCGGAGAGTTCGTGTCAGTCTACACTCAATATGATATAGAGAAAGCTCAAAGGAAGAGAGATGGGAAACAAAAGAATAATAGTGACATGCAATCAAACCACCCAGCAGCTGAAGAAGAGAAGCTACCAAACCCACTGCAGGCTGCAGTCGCGTCGGCGATTGCGTTTTCGGTCGGAGCAGTCATTCCTTTACTGGCAGCAGTGTTCATCCGAAACCATAAGGTGAGGCTCGGCGTGGTGGCAGGGGTGGCGAGCGTGACGCTGGTGGTTTTCGGAGGAGTCGGAGCCATACTGGGAAGGACTCCGGTCGGGAAATCGGCAGCGAGGGTGCTGGTCGGGGGGTGGATGGCTATGGCCATCACATTTGGCCTTACAAAGCTGCTGGGTTCCAAGGGACTGTGA 615 54.63 MASFHVQDSESGSAVDYAQRGQWLRAAILGANDGLVSVASLMMGVGAVKPDAKAMLIAGFAGLVAGACSMAIGEFVSVYTQYDIEKAQRKRDGKQKNNSDMQSNHPAAEEEKLPNPLQAAVASAIAFSVGAVIPLLAAVFIRNHKVRLGVVAGVASVTLVVFGGVGAILGRTPVGKSAARVLVGGWMAMAITFGLTKLLGSKGL 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3124787 3126375 + Sed0015302.1 Sed06g0346 716889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0346 204 Coils Coil 84 104 - -
Sed06g0346 204 CDD Nodulin-21 22 173 - -
Sed06g0346 204 MobiDBLite consensus disorder prediction 89 112 - -
Sed06g0346 204 Pfam VIT family 24 99 IPR008217 GO:0005384(InterPro)|GO:0030026(InterPro)
Sed06g0346 204 Pfam VIT family 104 196 IPR008217 GO:0005384(InterPro)|GO:0030026(InterPro)
Sed06g0346 204 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 8 200 IPR008217 GO:0005381(PANTHER)|GO:0005384(PANTHER)|GO:0005384(InterPro)|GO:0006880(PANTHER)|GO:0016020(PANTHER)|GO:0030026(PANTHER)|GO:0030026(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0346 Sed-Chr6:3124787 Sed07g2863 Sed-Chr7:43367755 4.50E-60 dispersed
Sed06g0346 Sed-Chr6:3124787 Sed03g0480 Sed-Chr3:2927380 3.80E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0346 K22736 - csv:101214875 328.561