Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0381 ATGGGAGCAAACACCGACGCCAATCCAGAAAACTCCGACGATCAGCAAAAGCGATCGGAGATCTACACCTACGAAGCGCCATGGCACATCTACGCCATGAACTGGAGCGTCCGTCGCGACAAGAAGTACCGTCTCGCCATTGCCAGCCTCCTCGAGCAGTACCCCAACCGCGTCGAGATCGTCCAGCTCGATGATTCCAGCGGCGAGATCCGCTCCGATCCCAACCTCTCCTTCGAGCACCCTTACCCTCCGACCAAGACCAACTTCATCCCCGACAAGGAGTGCAACCGCCCCGACCTCCTCGCCACTTCCAGCGATTTCCTCCGCGTATGGCGGATCTCCGACGACTCCACCTCCGTCGAGCTCAAGAGCGTCCTTAACGGCAACAAGAACAGCGAGTTTTGTGGCCCTCTCACTTCCTTTGATTGGAACGATGCCGAGCCGAAGCGAATCGGGACTTCGAGTATTGATACGACCTGCACAATTTGGGATATTGAGCGGGAGACGGTGGATACGCAGCTGATTGCTCATGATAAGGAGGTTTACGACATTGCCTGGGGCGGTGTTGGTGTTTTTGCTTCTGTTTCTGCTGATGGCTCTGTTCGGGTTTTCGATTTGCGGGATAAGGAGCATTCGACGATCATTTACGAGAGTTCTGAGCCGGATACTCCGTTGGTTAGGTTAGGTTGGAATAAGCAGGATCCGAGATATATGGCTACGATCATTATGGACAGTGCTAAGGTTGTTGTGCTTGACATTCGCTTTCCGACTCTTCCGGTCGTCGAGTTGCAGCGGCATCAAGCTAGTGTGAATGCCATTGCTTGGGCTCCCCATAGTTCTTGCCATATCTGTACTGCAGGGGATGATTCTCAGGCATTGATTTGGGATTTGTCGTCCATGGGGCAGCCCGTTGAAGGTGGGCTTGATCCTATTCTTGCCTACACGGCTGGAGCGGAAATCGAGCAGCTGCAATGGTCTTCTTCCCAGCCGGATTGGGTTGCCATTGCCTTTTCTACTAAGCTTCAGATTCTGAGGGTTTGA 1041 53.51 MGANTDANPENSDDQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSSGEIRSDPNLSFEHPYPPTKTNFIPDKECNRPDLLATSSDFLRVWRISDDSTSVELKSVLNGNKNSEFCGPLTSFDWNDAEPKRIGTSSIDTTCTIWDIERETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3386610 3388660 + Sed0012223.1 Sed06g0381 716924

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0381 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 299 IPR001680 GO:0005515(InterPro)
Sed06g0381 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 299 - -
Sed06g0381 346 PANTHER WD REPEAT CONTAINING PROTEIN 11 346 IPR045159 GO:0005634(PANTHER)
Sed06g0381 346 SUPERFAMILY WD40 repeat-like 56 304 IPR036322 GO:0005515(InterPro)
Sed06g0381 346 SMART WD40_4 167 205 IPR001680 GO:0005515(InterPro)
Sed06g0381 346 SMART WD40_4 119 164 IPR001680 GO:0005515(InterPro)
Sed06g0381 346 SMART WD40_4 256 296 IPR001680 GO:0005515(InterPro)
Sed06g0381 346 ProSitePatterns Trp-Asp (WD) repeats signature. 283 297 IPR019775 -
Sed06g0381 346 FunFam WD repeat-containing protein LWD1 17 345 - -
Sed06g0381 346 Gene3D - 8 345 IPR015943 GO:0005515(InterPro)
Sed06g0381 346 Pfam WD domain, G-beta repeat 173 205 IPR001680 GO:0005515(InterPro)
Sed06g0381 346 Pfam WD domain, G-beta repeat 260 296 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0381 K11805 - - csv:101203334 686.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0381 Sed-Chr6:3386610 Sed13g0028 Sed-Chr13:184536 1.80E-114 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g163 . . . . . . . . Cmo19g00748 Cmo11g01740 . . . . Sed06g0381 Cpe04g00592 . Bhi05g01715 Tan02g0682 Cmetu01g1199 . Hepe02g0425 . . Cla02g00427 Cam02g0436 Cec02g0434 Cco02g0452 Clacu02g0437 Cmu02g0432 Cre02g0766 Cone12ag1232 . . . . Csa07g00100 . Cme01g01262 Blo04g00567 . . . Bpe15g00813 . Bma03g00609 . . . . Cma11g01381 Cma19g00739 . Car19g00568 . . . . . . . . . . . . . . . . Lsi11g01200 . Chy01g00681 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001974 2 3 2 4 2 2 3 2 2 2 2 2 2 2 2 3 2 4 2 2 2 2 2 2 2 1 2 2 3 1 66