Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0390 ATGGAGCAAGGATCTGGGTTTTCATCTTCTTCCTCTCCTTCTCAGCTTTCTGGGGCATGCCTTACTAGGAATCTAATACTCGCCTACCAAAGTTTTGGAGTAGTGTATGGAGATTTGAGCACTTCGCCCCTTTACGTTTACTCAAGTACATTTGCGGGGAAGTTGCAAAATCATCGAACTGAAGAAGTAGTATTTGGTGCATTCTCCTTGATCTTCTGGACTTTTACACTGATACCGTTATTGAAGTATGTCTTTATTGTATTGAGCGCAGATGACAATGGTGAAGGAGGAACCTTTGCTCTTTACTCCCTGCTCTGCCGGCACGCTAAGTTGAGTTTACTTCCTAACCAACAAGCAGCTGATGAGGAGCTTTCAGCTTACAAATATGGTCCATCTTCTCATGTAGTAGCCGCCCCTTCTCCACTGAAAAGGTTTTTGGAAAGGCATAAAACACTTAGAACTGTCTTACTTCTTGTGGTATTATTTGGTGCTTGCATGGTCATTGGTGATGGCGTGCTAACTCCTGCAATTTCAGTTCTATCCTCAGTTTCAGGTATACAAGTTACTGAAGCAAAATTGACCAATGGGACACTCCTTTTGATTGCTTGTGCCATACTGGTTGGTCTGTTTGCTCTGCAGCATTGTGGCACCCATAAGGTTGCATTTATGTTTGCCCCTATAGTTATCATCTGGTTGTTATCAATTTTCTCCATTGGTCTATACAACATAATACATTGGAACCCAAGCATTCTACGTGCACTTTCCCCTCATTATGTTATCAAGTTCTTCAGAGTCACTGGTAAAGATGGTTGGCTTTCTCTCGGAGGGATTCTTCTGGCCATAACTGGTACCGAAGCGATGTTTGCTGATCTTGGTCATTTCACTGCTTTGTCAATCAGGCTTGCATTTGCATTCATTATTTACCCTTGTTTGGTAGTGCAATACATGGGTCAAGCTGCCTTTCTGTCTAAGAACCTTGATATGTTTCAGAACAGTTTTTATGACTCGATACCTGAACCTGTGTTTTGGCCTGTTTTTGTTATTGCCACCCTTGCGGCTATTGTGGGGAGTCAGGCTGTCATTACTGCTACTTTCTCTATTGTCAAACAGTGCCATGCCCTTGGTTGCTTTCCTAGAGTGAAAGTTGTTCATACCTCTAAACACATATATGGGCAGATCTACATCCCAGAAATTAACTGGATACTAATGATCCTCACACTTTCCATTACAATAGGGTTTCAAGATACGACACTGATTGGAAATGCATATGGACTTGCCTGCATGACAGTTATGTTCACGACGACATTTCTTATGGCACTCGTCCTATTATTCGTTTGGCAAAGAAGTATCCTACTGGCTGCACCTTTTCTCATCTTCTTCTGGTCTATCGAGGGTGTTTACCTATCAGCAGCAATCATAAAAGTACCTCAAGGAGGGTGGGTTCCGCTTGTGCTGTCAGCCATTTTTATGATAGTTATGTTTGTCTGGCATTATGGCACTCGCAAGAAGTACAACTTTGATCTACACAACAAAGTTTCACTTAAGTGGTTGCTTGGCCTAGGCCCTAGCCTCGGCATAGTTCGTGTCCCCGGTATCGGTCTCATATACTCGGAATTGGCGACAGGAGTTCCATCAATATTTTCTCACTTTGTGACAAATCTCCCTGCGTTTCACAAAGTTTTAGTTTTTGTTTGTGTAAAGTCTGTTCCTGTTCCGTATGTCTCGCCCGAAGAACGTTTTCTCATTGGGAGAGTCTGTCCTAGACCTTACCGCATGTACCGGTGCATAGTGAGGTATGGCTACAAGGACATTCAGAAGGATGATGGGGACTTTGAGAACCAGCTGATACTAAACATTGCAGAATTTATTCAAATGGAGGCTGAGGAACCACAATTCTCAAGCTCTGAAAGCTCTTCCATTGATGGCAGGATGGCTGTAATAAGCACTAGGAGCATACAATCAAGCTTGAGCCTCATAGTTTCAGGGCACGAAGAAGTCGGTACGAGCAACTCCATCCACAGCAGCAAATCTGCTACACTCCATAGTTTACGATCTGCCTACGAAGACGAGAATCCGCAACTAAGAAGGCGTCAAGTAAGGTTTCAGCTATCTCCCAGTCCATCAATAGACCCTAGAGTTAAGGAAGAATTGATGGACTTGATCCAAGCCAAAGAGGCTGGTGTAGCATACATAATGGGACACTCATACGTCAAGGCTAGAAGATCTTCGTCGTATTTGAAGAAGCTTGTAATCGATATCGGATACTCGTTCCTCCGAAAGAACTGCAGAGGCCCGTCTGTTGCACTCAACATCCCTCACATCAGCCTAATTGAAGTGGGGATGATATATTATGTTTAG 2358 43.38 MEQGSGFSSSSSPSQLSGACLTRNLILAYQSFGVVYGDLSTSPLYVYSSTFAGKLQNHRTEEVVFGAFSLIFWTFTLIPLLKYVFIVLSADDNGEGGTFALYSLLCRHAKLSLLPNQQAADEELSAYKYGPSSHVVAAPSPLKRFLERHKTLRTVLLLVVLFGACMVIGDGVLTPAISVLSSVSGIQVTEAKLTNGTLLLIACAILVGLFALQHCGTHKVAFMFAPIVIIWLLSIFSIGLYNIIHWNPSILRALSPHYVIKFFRVTGKDGWLSLGGILLAITGTEAMFADLGHFTALSIRLAFAFIIYPCLVVQYMGQAAFLSKNLDMFQNSFYDSIPEPVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLSITIGFQDTTLIGNAYGLACMTVMFTTTFLMALVLLFVWQRSILLAAPFLIFFWSIEGVYLSAAIIKVPQGGWVPLVLSAIFMIVMFVWHYGTRKKYNFDLHNKVSLKWLLGLGPSLGIVRVPGIGLIYSELATGVPSIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGYKDIQKDDGDFENQLILNIAEFIQMEAEEPQFSSSESSSIDGRMAVISTRSIQSSLSLIVSGHEEVGTSNSIHSSKSATLHSLRSAYEDENPQLRRRQVRFQLSPSPSIDPRVKEELMDLIQAKEAGVAYIMGHSYVKARRSSSYLKKLVIDIGYSFLRKNCRGPSVALNIPHISLIEVGMIYYV 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3448587 3456186 - Sed0019184.1 Sed06g0390 716933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0390 785 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 22 785 IPR003855 GO:0006813(PANTHER)|GO:0015079(PANTHER)|GO:0015079(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
Sed06g0390 785 NCBIfam potassium uptake protein 27 785 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Sed06g0390 785 Pfam K+ potassium transporter C-terminal domain 530 783 IPR053952 -
Sed06g0390 785 Pfam K+ potassium transporter integral membrane domain 27 517 IPR053951 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1178 Sed-Chr1:8763586 Sed06g0390 Sed-Chr6:3448587 1.90E-236 dispersed
Sed01g1179 Sed-Chr1:8763586 Sed06g0390 Sed-Chr6:3448587 5.80E-191 dispersed
Sed06g0390 Sed-Chr6:3448587 Sed06g0572 Sed-Chr6:5021405 5.40E-255 dispersed
Sed10g1497 Sed-Chr10:31416105 Sed06g0390 Sed-Chr6:3448587 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0390 K03549 - csv:101208973 1451.8