Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0407 ATGTCCATCCTGCCTTCACAAATCCAGGGTTCCACTTCTTCGTCTTCTTCCTCTTCAGTTTCCTCTCTAAACCCTAATTCCCACCATGGATCCGACCCTCTCTTCTCTCAATCGTCCCCTCCCTCTTTCACGCATTCCTTTCCATCCCCACGGTCGATCTCCGATCCTCAATCTCCTCTCCGGGATCTCTCCGACGTTTCAGGCCCGTCGTCTCAACCTGCAAACGATGCTGAATCTTCCAAGAGGGTAAGTGAATCAGAGAATCTGAATGATTTGAAGATGCCAGCTCATCAAAACACCGAAACCCATTTGCAGTGCCAATCTGGCGGACGAGAGGGTGGATCAGTCCTACCAGGGAGTAAAATATCATCTACTCTAAATTCTTCTCATGATCAGCAATCTCCAAACTCTCATGGAAACAACAAACGCTCAGCTGGAAGAAAATCCCAAATCACAAATGGCAATCATTTGCTCAATTTTCAATATGATCCCATTTCTCGCCCCCGTCCTCGAGCCAGAGCTCCCCCTCCAAGAAGGCCACATAAGATAAAGCCATACAATAAGGATCTCTTCCTCCAAGCTAATTATAAATTTGTGGTTTTAGATTCAGGTTATCGGACACCTGAATATTTGGATCCTGATAAAATGCTTCGTTGGGAGGATATCATATGCGTAAGGTATTCGACACCATCGTTGGTTCAGTGTCCTATTTGTCTGGAGCATCCACTCTGTCCTCAAATTACTTCATGTGGGCATATTTATTGTTTCCCGTGCATTTTGAGGTACCTGTTAATGGGCAAGGAGGATCATAAAGGTGACTGCTGGAAAAAATGCCCTTTGTGTTTTGTGATGTTGTCTCCAAAGGATTTATACACTGTCCACATTGAGCTTTTGAAGCAATATTCTGTTGGTGATACTATAGACTTCATGCTCTTAACTCGGCAAAAAAGTTCATTCACCATATCATTCAAGGATAAACAAGAGGATTATATTAGGCCGAGTGACAAGGATGAAATCTATGATTCTTTTTCGAAGTTTATATTTACATCGGATGTGGATCTCTCAGTGCGGAAAGCAATATCCGATCTAGATGCCTGGTTAGCAAAAGCAGAAGCAGGGCAAGTGGATGACCGTGAAAAGCTTCCATATGTTTGTGCTGCTTTGGAACAACTGGAGCAGAGAAAGAAGTATTGGAATGACCATCAGGCTTGTTTTAAGCAGAATGACTGTCATATAGGATCTCATATACTCCAGCCAACTGATAATGTTAACAATGCTGATCCTCGAGCTTGTGGTTCGAGACATGAGGCTTCTTCCATCAATATTAATGATGGTTGCAAGTTTCTAGGAAATGTAGTGCAAGATAAGTTGGATTGTTCTTCTACTGTAGGTCAGACTGAGGCTGGGGATGAATCTGTAGAACATCAACAAAACTCAAACGACATCGGAGATGCGAAGGACAAGGATGCCTACAAGTTTTACCAGGCTACTGATGGCCAGCTTATCATTCTCCATCCGTTAAGCATGAAGTGCCTTTTACAACATCATGGGAGTTATGATAAGCTACCTCTCAGAATAAGTGGAAAGATTTTAGAATTCGAAACAGTGACCCAGACTGAGGCCACAAGGAGACGGTACCGTTACTTAAGTCATTTTTCTTTAACAACATCATTTCAGCTCTGTGAAATTGATTTGAATAACCTATTGCCTTCGTCCTCCATGATTCCCTTCGTGGACGAGATAAAGAAGCGTGAGAAGCAGAGGAAACAACTTGCGAAAAAGATTCAAAGGGAGAAGATCAAAGCAGAAGCTGCTTCAACGTGTTCTTCGTCAATGATGGCCAATTCAGGAAGTTCCTATCAGTACGCTACACCAAATCTTTCCCTGGATGACTTTGAAGCTTTAGGAAGCTCTCCCGTGATATCATCCAGCCCGCCTGTTGTGGGGAGACAACTGTTCTCAAGCGTTACACGACTCGGTTTCGCTGCTGCACATGATTCTCCATCCTTGAGAATTGAGGAAACTGATTCCCTGCACACTAACGAAGTGAAGAGAGACTTATCTGGTGCAAATGAGATAGACAATGCAACCCCATCGTTTGCGAACGTAATATCGAGAGCGAAGTCAGGAGGAAGTACAGAATCTCCAAAGGTAAATGAAGCGGGAAAGAAAGGGAAGAAACCAAGTCGAGTTCTGTTATCCACGGCGGGCGGTCGACGCTATTGA 2226 43.71 MSILPSQIQGSTSSSSSSSVSSLNPNSHHGSDPLFSQSSPPSFTHSFPSPRSISDPQSPLRDLSDVSGPSSQPANDAESSKRVSESENLNDLKMPAHQNTETHLQCQSGGREGGSVLPGSKISSTLNSSHDQQSPNSHGNNKRSAGRKSQITNGNHLLNFQYDPISRPRPRARAPPPRRPHKIKPYNKDLFLQANYKFVVLDSGYRTPEYLDPDKMLRWEDIICVRYSTPSLVQCPICLEHPLCPQITSCGHIYCFPCILRYLLMGKEDHKGDCWKKCPLCFVMLSPKDLYTVHIELLKQYSVGDTIDFMLLTRQKSSFTISFKDKQEDYIRPSDKDEIYDSFSKFIFTSDVDLSVRKAISDLDAWLAKAEAGQVDDREKLPYVCAALEQLEQRKKYWNDHQACFKQNDCHIGSHILQPTDNVNNADPRACGSRHEASSININDGCKFLGNVVQDKLDCSSTVGQTEAGDESVEHQQNSNDIGDAKDKDAYKFYQATDGQLIILHPLSMKCLLQHHGSYDKLPLRISGKILEFETVTQTEATRRRYRYLSHFSLTTSFQLCEIDLNNLLPSSSMIPFVDEIKKREKQRKQLAKKIQREKIKAEAASTCSSSMMANSGSSYQYATPNLSLDDFEALGSSPVISSSPPVVGRQLFSSVTRLGFAAAHDSPSLRIEETDSLHTNEVKRDLSGANEIDNATPSFANVISRAKSGGSTESPKVNEAGKKGKKPSRVLLSTAGGRRY 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3591864 3598992 + Sed0023591.1 Sed06g0407 716950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0407 741 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 320 IPR013083 -
Sed06g0407 741 Coils Coil 581 601 - -
Sed06g0407 741 ProSiteProfiles Zinc finger RING-type profile. 235 281 IPR001841 -
Sed06g0407 741 MobiDBLite consensus disorder prediction 118 160 - -
Sed06g0407 741 MobiDBLite consensus disorder prediction 465 479 - -
Sed06g0407 741 PANTHER RING FINGER 10 FAMILY MEMBER 73 741 IPR039739 GO:0000976(PANTHER)|GO:0045944(PANTHER)
Sed06g0407 741 MobiDBLite consensus disorder prediction 465 484 - -
Sed06g0407 741 FunFam RING finger protein 10 228 296 - -
Sed06g0407 741 CDD RING-HC_RNF10 233 290 - -
Sed06g0407 741 ProSitePatterns Zinc finger RING-type signature. 250 259 IPR017907 -
Sed06g0407 741 MobiDBLite consensus disorder prediction 1 184 - -
Sed06g0407 741 MobiDBLite consensus disorder prediction 705 741 - -
Sed06g0407 741 MobiDBLite consensus disorder prediction 1 79 - -
Sed06g0407 741 MobiDBLite consensus disorder prediction 91 109 - -
Sed06g0407 741 Pfam Zinc finger, C3HC4 type (RING finger) 235 281 IPR018957 GO:0046872(InterPro)
Sed06g0407 741 SUPERFAMILY RING/U-box 230 294 - -
Sed06g0407 741 SMART ring_2 235 281 IPR001841 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0407 K26979 - csv:101203987 1174.84