Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g0409 | ATGCTTCCCAAACCCACCGGAATCCTCTGGCTCGACGCCGACCCCACCGCCGCCGCCGCCGACGAATCCGCCATTTCCGACTGGTACCTCCACTCCTCCTCCTCCACTCCTCTCAATCCCTCCCTCCATGATTTCCGTTCCTTCTCTTCTCACCACGACCTTGCTTTCTCCTCAAACCCCATGGATTCTTCCTCTTCTTGTTCTCCCTCTCAGGATTTTGCCCAATCTCTCCTTCCACCTCACAGTTCCTGCTTCTCTTCTCTTCTCAACGCCGTTTCCGCCACCAGTTTCGACAATGGCTACGATTTCGCCGCCGACGCTGCTCTGTTCGGATCTTACCCGCCGAATCCAGCTCCTACCTCCTCCGTTTTCATGGACTTCGCCGGCGTTCCTCAAATCGGTAACCAGGCGCTTTGTCTGAGCCAATCCGAGTTGCTTCCGGTCGCCGACGATCCTCCGTCCTTCGCCGCTGGATTTAATCCGGCGGCGGTTTTCGAGAACTTCGATGCTCTGTTTGAGAACCGGTCTAAGGTTTTGAGGCCTCTCGAAGTGTTCCCGCAGGTCGGTGCTCAGCCGACGCTGTTTCAGAAGCGATTGGCGCACCGATTTGGCTCTGGTGGAGCCGATAAGCGTGGGGATTTGGAGGCTTCGGGTTTGAAATTAGGGGAAGGGTTAATGTGGACGGCGAATTTGGAGAAGACGAGGAGGAACGACGGCGGCGAGGATATTGAGGATGTTTCTCGGTTGTATTACGATTCCGATGAAGGTAATGAGTATAGCAAGGAAGAGGACGATGCTGATGCTAAAAACTGTGGAAGTAATTCTAATGCGAACAGCACCGTGACCGGCGGCGACCAGAAGGGGAAGAAGAAGGGGCTGCCGGCGAAGAATCTCATGGCGGAGCGGCGGCGGAGGAAGAAGCTCAACGATAGACTTTACATGCTAAGGTCCATCGTCCCTAAAATTAGCAAGATGGATAGAGCTTCAATACTTGGAGACGCCATTGATTACTTGAAGGAGCTTCTTCAAAGGATAAATGATGTCCATAATGAACTCGAATCGACTCCTCCTGGTTCTTTGCTGCAGCCTTCTCCAAGCTTTCACCCGTTGACGCCGACGTTGCCGACTCTCCCCTGTCGTGTCAAAGAAGAGCTGTGTCCAAGCTCCATGTCCAGCCCCAAAACCCAGCCTGCCAGGGTTGAAGTCCGAGTCAGAGAAGGCAGAGCTGTCAATATTCACATGTTTTGTTCTCGCAAGCCGGGTCTCTTGCTATCCACCATGAGGGCTCTGGATAACCTTGGCTTGGACATCCAACAAGCCGTAATCAGCTGCTTCAATGGATTCGCTTTAGACGTGTTTCGTGCCGAGCAATCCAAGGAAGGTCAAGAGATTTCACCTGAGCAAATAAAGGCAGTGCTGTTGGATTCAGCTGGTTTACATGGTGTTATTTAA | 1452 | 52.82 | MLPKPTGILWLDADPTAAAADESAISDWYLHSSSSTPLNPSLHDFRSFSSHHDLAFSSNPMDSSSSCSPSQDFAQSLLPPHSSCFSSLLNAVSATSFDNGYDFAADAALFGSYPPNPAPTSSVFMDFAGVPQIGNQALCLSQSELLPVADDPPSFAAGFNPAAVFENFDALFENRSKVLRPLEVFPQVGAQPTLFQKRLAHRFGSGGADKRGDLEASGLKLGEGLMWTANLEKTRRNDGGEDIEDVSRLYYDSDEGNEYSKEEDDADAKNCGSNSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSIVPKISKMDRASILGDAIDYLKELLQRINDVHNELESTPPGSLLQPSPSFHPLTPTLPTLPCRVKEELCPSSMSSPKTQPARVEVRVREGRAVNIHMFCSRKPGLLLSTMRALDNLGLDIQQAVISCFNGFALDVFRAEQSKEGQEISPEQIKAVLLDSAGLHGVI | 483 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 3616331 | 3621362 | - | Sed0024091.1 | Sed06g0409 | 716952 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g0409 | 483 | MobiDBLite | consensus disorder prediction | 254 | 269 | - | - | |
Sed06g0409 | 483 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 295 | 361 | IPR036638 | GO:0046983(InterPro) | |
Sed06g0409 | 483 | CDD | bHLH_AtAMS_like | 295 | 366 | - | - | |
Sed06g0409 | 483 | MobiDBLite | consensus disorder prediction | 270 | 285 | - | - | |
Sed06g0409 | 483 | FunFam | BHLH transcription factor | 288 | 356 | - | - | |
Sed06g0409 | 483 | Pfam | Plant bHLH transcription factor, ACT-like domain | 400 | 473 | IPR054502 | - | |
Sed06g0409 | 483 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 292 | 341 | IPR011598 | GO:0046983(InterPro) | |
Sed06g0409 | 483 | Pfam | Helix-loop-helix DNA-binding domain | 299 | 341 | IPR011598 | GO:0046983(InterPro) | |
Sed06g0409 | 483 | CDD | ACT_UUR-ACR-like | 412 | 472 | - | - | |
Sed06g0409 | 483 | Gene3D | - | 286 | 355 | IPR036638 | GO:0046983(InterPro) | |
Sed06g0409 | 483 | SMART | finulus | 298 | 347 | IPR011598 | GO:0046983(InterPro) | |
Sed06g0409 | 483 | ProSiteProfiles | ACT domain profile. | 411 | 483 | IPR002912 | - | |
Sed06g0409 | 483 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 252 | 478 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) | |
Sed06g0409 | 483 | MobiDBLite | consensus disorder prediction | 254 | 292 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g3843 | Sed-Chr4:46818355 | Sed06g0409 | Sed-Chr6:3616331 | 1.20E-17 | dispersed | |
Sed06g0409 | Sed-Chr6:3616331 | Sed08g2407 | Sed-Chr8:37177970 | 1.30E-105 | dispersed | |
Sed06g0409 | Sed-Chr6:3616331 | Sed01g1539 | Sed-Chr1:11119654 | 1.00E-115 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38814 | PF00010 | HLH | 1.00E-09 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g0409 | - | - | - | 0.0 |