Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0409 ATGCTTCCCAAACCCACCGGAATCCTCTGGCTCGACGCCGACCCCACCGCCGCCGCCGCCGACGAATCCGCCATTTCCGACTGGTACCTCCACTCCTCCTCCTCCACTCCTCTCAATCCCTCCCTCCATGATTTCCGTTCCTTCTCTTCTCACCACGACCTTGCTTTCTCCTCAAACCCCATGGATTCTTCCTCTTCTTGTTCTCCCTCTCAGGATTTTGCCCAATCTCTCCTTCCACCTCACAGTTCCTGCTTCTCTTCTCTTCTCAACGCCGTTTCCGCCACCAGTTTCGACAATGGCTACGATTTCGCCGCCGACGCTGCTCTGTTCGGATCTTACCCGCCGAATCCAGCTCCTACCTCCTCCGTTTTCATGGACTTCGCCGGCGTTCCTCAAATCGGTAACCAGGCGCTTTGTCTGAGCCAATCCGAGTTGCTTCCGGTCGCCGACGATCCTCCGTCCTTCGCCGCTGGATTTAATCCGGCGGCGGTTTTCGAGAACTTCGATGCTCTGTTTGAGAACCGGTCTAAGGTTTTGAGGCCTCTCGAAGTGTTCCCGCAGGTCGGTGCTCAGCCGACGCTGTTTCAGAAGCGATTGGCGCACCGATTTGGCTCTGGTGGAGCCGATAAGCGTGGGGATTTGGAGGCTTCGGGTTTGAAATTAGGGGAAGGGTTAATGTGGACGGCGAATTTGGAGAAGACGAGGAGGAACGACGGCGGCGAGGATATTGAGGATGTTTCTCGGTTGTATTACGATTCCGATGAAGGTAATGAGTATAGCAAGGAAGAGGACGATGCTGATGCTAAAAACTGTGGAAGTAATTCTAATGCGAACAGCACCGTGACCGGCGGCGACCAGAAGGGGAAGAAGAAGGGGCTGCCGGCGAAGAATCTCATGGCGGAGCGGCGGCGGAGGAAGAAGCTCAACGATAGACTTTACATGCTAAGGTCCATCGTCCCTAAAATTAGCAAGATGGATAGAGCTTCAATACTTGGAGACGCCATTGATTACTTGAAGGAGCTTCTTCAAAGGATAAATGATGTCCATAATGAACTCGAATCGACTCCTCCTGGTTCTTTGCTGCAGCCTTCTCCAAGCTTTCACCCGTTGACGCCGACGTTGCCGACTCTCCCCTGTCGTGTCAAAGAAGAGCTGTGTCCAAGCTCCATGTCCAGCCCCAAAACCCAGCCTGCCAGGGTTGAAGTCCGAGTCAGAGAAGGCAGAGCTGTCAATATTCACATGTTTTGTTCTCGCAAGCCGGGTCTCTTGCTATCCACCATGAGGGCTCTGGATAACCTTGGCTTGGACATCCAACAAGCCGTAATCAGCTGCTTCAATGGATTCGCTTTAGACGTGTTTCGTGCCGAGCAATCCAAGGAAGGTCAAGAGATTTCACCTGAGCAAATAAAGGCAGTGCTGTTGGATTCAGCTGGTTTACATGGTGTTATTTAA 1452 52.82 MLPKPTGILWLDADPTAAAADESAISDWYLHSSSSTPLNPSLHDFRSFSSHHDLAFSSNPMDSSSSCSPSQDFAQSLLPPHSSCFSSLLNAVSATSFDNGYDFAADAALFGSYPPNPAPTSSVFMDFAGVPQIGNQALCLSQSELLPVADDPPSFAAGFNPAAVFENFDALFENRSKVLRPLEVFPQVGAQPTLFQKRLAHRFGSGGADKRGDLEASGLKLGEGLMWTANLEKTRRNDGGEDIEDVSRLYYDSDEGNEYSKEEDDADAKNCGSNSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSIVPKISKMDRASILGDAIDYLKELLQRINDVHNELESTPPGSLLQPSPSFHPLTPTLPTLPCRVKEELCPSSMSSPKTQPARVEVRVREGRAVNIHMFCSRKPGLLLSTMRALDNLGLDIQQAVISCFNGFALDVFRAEQSKEGQEISPEQIKAVLLDSAGLHGVI 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3616331 3621362 - Sed0024091.1 Sed06g0409 716952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0409 483 MobiDBLite consensus disorder prediction 254 269 - -
Sed06g0409 483 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 295 361 IPR036638 GO:0046983(InterPro)
Sed06g0409 483 CDD bHLH_AtAMS_like 295 366 - -
Sed06g0409 483 MobiDBLite consensus disorder prediction 270 285 - -
Sed06g0409 483 FunFam BHLH transcription factor 288 356 - -
Sed06g0409 483 Pfam Plant bHLH transcription factor, ACT-like domain 400 473 IPR054502 -
Sed06g0409 483 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 292 341 IPR011598 GO:0046983(InterPro)
Sed06g0409 483 Pfam Helix-loop-helix DNA-binding domain 299 341 IPR011598 GO:0046983(InterPro)
Sed06g0409 483 CDD ACT_UUR-ACR-like 412 472 - -
Sed06g0409 483 Gene3D - 286 355 IPR036638 GO:0046983(InterPro)
Sed06g0409 483 SMART finulus 298 347 IPR011598 GO:0046983(InterPro)
Sed06g0409 483 ProSiteProfiles ACT domain profile. 411 483 IPR002912 -
Sed06g0409 483 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 252 478 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Sed06g0409 483 MobiDBLite consensus disorder prediction 254 292 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3843 Sed-Chr4:46818355 Sed06g0409 Sed-Chr6:3616331 1.20E-17 dispersed
Sed06g0409 Sed-Chr6:3616331 Sed08g2407 Sed-Chr8:37177970 1.30E-105 dispersed
Sed06g0409 Sed-Chr6:3616331 Sed01g1539 Sed-Chr1:11119654 1.00E-115 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38814 PF00010 HLH 1.00E-09 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0409 - - - 0.0