Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0421 ATGAATGACGCTGATGTTTCCAAGCAGATCCAGCAGATGGTGAGGTTCATCCGCCAGGAAGCGGAGGAAAAGGCCAACGAGATCTCCGTCTCCGCTGAGGAGGAATTCAATATTGAAAAGCTGCAGCTGGTTGAGGCAGAGAAGAAGAAGATCAGGCAAGAGTACGAGAAGAAGGAGAAGCAAGTTGAAATTCGGAAGAAGATTGAGTACTCCATGCAGCTCAACGCTTCTCGGATCAAAGTTCTGCAAGCACAGGACGATGTAGTGAACTCTATGAAAGAGGCAGCATCTAAGGAACTTCTGAATATAAGTGGAAGTGAACATCTCTACAAAAATCTTTTGAAGTATCTCATTGTTCAGAGCTTGCTTCGACTGAAAGAGCCAGCTGTTTTATTGCGATGCCGCAAAAATGACCTCAATTTGGTGGAGTCTGTGCTGGGTTCAGCAGCGTCTGAATATGCAGAGAAAGCTAAAGTTCATGAGCCAGAGATCATTATCGACCGTGTCCATCTTCCACCTGGTCCAAGCCATCACCATGAGCACGGTCTTTTTTGCTCTGGAGGTGTAGTATTGGCATCTCGAGATGGGAAAATTGTCTGTGAGAACACCCTTGATGCGAGGTTGGATGTCGTGTTTCGTAAAAAGCTTCCAGAGATCCGAAAAAGCCTTTTCAGTCAAGTTGCTGCATGA 690 45.94 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEKQVEIRKKIEYSMQLNASRIKVLQAQDDVVNSMKEAASKELLNISGSEHLYKNLLKYLIVQSLLRLKEPAVLLRCRKNDLNLVESVLGSAASEYAEKAKVHEPEIIIDRVHLPPGPSHHHEHGLFCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKSLFSQVAA 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3720826 3724994 + Sed0000509.1 Sed06g0421 716964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0421 229 Hamap V-type proton ATPase subunit E [atpE]. 8 225 IPR002842 GO:0033178(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed06g0421 229 Gene3D - 1 62 - -
Sed06g0421 229 Pfam ATP synthase (E/31 kDa) subunit 16 224 IPR002842 GO:0033178(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed06g0421 229 PANTHER ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED 1 226 IPR002842 GO:0033178(InterPro)|GO:0046961(InterPro)|GO:0046961(PANTHER)|GO:1902600(InterPro)
Sed06g0421 229 SUPERFAMILY V-type ATPase subunit E-like 87 224 - -
Sed06g0421 229 Gene3D - 92 228 IPR038495 -
Sed06g0421 229 Coils Coil 38 61 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0421 Sed-Chr6:3720826 Sed08g1523 Sed-Chr8:29702533 5.90E-109 dispersed
Sed06g0421 Sed-Chr6:3720826 Sed08g1522 Sed-Chr8:29702533 5.90E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0421 K02150 - csv:101217221 407.912