Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0434 ATGGGCGAAAACAAACCAGCAGAAATCAAAGATTTCCAAATAGCAATCGCAGAGAAAGAACAGGGCAAGAAACAATTAGCCCCAAAACGAAGCTCAAACAAAGACCGCCACACCAAAGTGGAAGGCCGAGGCCGGAGAATCCGGATGCCAGCGCTTTGTGCGGCGAGGATCTTTCAATTGACGAGGGAATTGGGTCACAAATCCGACGGCGAAACGATCCAGTGGCTGTTGCAGCAAGCGGAGCCGTCGATTATCGCCGCCACCGGCACCGGCACCATCCCGACATCGGCCATGGCGGCTTCGGGTTCGATTTCGCAACATGGGGTTTCGATTTCTGCTGGATTGCAGCAGAAATTGGAGGAATTAGGCGGCGGCGGCGGGTCCAGTAGGGTCAATTGGGGCAATTTGGGGCGACCCCATTTAGCCCCTACAGCTACAGGGCTTTGGGCCTCCCCTGTTTCTGGATTAGGGTTTCAATCATCCACTTCTGGTATTGTTGCTCAATCAGCCACCAATTTAGCTAATGAAACTTCAAATTACTTTCATAAGCTTGGGTTCCCTCCTTTTGAGTTGTCCCCCACCAATATGGGTCCTATGAGTTTCACCTCCATTTTAGGTGCAAACACTCATCAGTTACCTGGTTTGGAGCTTGGATTGTCCCAAGATGCTCATATTGGAGCTATCAATCCTCAAGCATTGAACCAGATTTATCAACAAATGGGACAGGCTAGAGTTCATCAACATCAAAATCAAGCTCAACACCATCAACAGCAACCTCCTGCTAAAGATGATTCTCAAGATTCAGGGTAG 810 49.38 MGENKPAEIKDFQIAIAEKEQGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPTSAMAASGSISQHGVSISAGLQQKLEELGGGGGSSRVNWGNLGRPHLAPTATGLWASPVSGLGFQSSTSGIVAQSATNLANETSNYFHKLGFPPFELSPTNMGPMSFTSILGANTHQLPGLELGLSQDAHIGAINPQALNQIYQQMGQARVHQHQNQAQHHQQQPPAKDDSQDSG 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3815520 3818218 - Sed0024351.1 Sed06g0434 716977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0434 269 MobiDBLite consensus disorder prediction 240 269 - -
Sed06g0434 269 MobiDBLite consensus disorder prediction 19 42 - -
Sed06g0434 269 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 25 258 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Sed06g0434 269 ProSiteProfiles TCP domain profile. 33 87 IPR017887 -
Sed06g0434 269 Pfam TCP family transcription factor 32 227 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2197 Sed-Chr4:35942929 Sed06g0434 Sed-Chr6:3815520 7.60E-30 dispersed
Sed06g0434 Sed-Chr6:3815520 Sed09g0363 Sed-Chr9:3297146 6.80E-32 dispersed
Sed06g0434 Sed-Chr6:3815520 Sed07g0108 Sed-Chr7:1018315 9.50E-42 wgd
Sed06g0434 Sed-Chr6:3815520 Sed08g1502 Sed-Chr8:29579047 3.90E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38816 PF03634 TCP 6.30E-32 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0434 - - - 0.0