Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g0434 | ATGGGCGAAAACAAACCAGCAGAAATCAAAGATTTCCAAATAGCAATCGCAGAGAAAGAACAGGGCAAGAAACAATTAGCCCCAAAACGAAGCTCAAACAAAGACCGCCACACCAAAGTGGAAGGCCGAGGCCGGAGAATCCGGATGCCAGCGCTTTGTGCGGCGAGGATCTTTCAATTGACGAGGGAATTGGGTCACAAATCCGACGGCGAAACGATCCAGTGGCTGTTGCAGCAAGCGGAGCCGTCGATTATCGCCGCCACCGGCACCGGCACCATCCCGACATCGGCCATGGCGGCTTCGGGTTCGATTTCGCAACATGGGGTTTCGATTTCTGCTGGATTGCAGCAGAAATTGGAGGAATTAGGCGGCGGCGGCGGGTCCAGTAGGGTCAATTGGGGCAATTTGGGGCGACCCCATTTAGCCCCTACAGCTACAGGGCTTTGGGCCTCCCCTGTTTCTGGATTAGGGTTTCAATCATCCACTTCTGGTATTGTTGCTCAATCAGCCACCAATTTAGCTAATGAAACTTCAAATTACTTTCATAAGCTTGGGTTCCCTCCTTTTGAGTTGTCCCCCACCAATATGGGTCCTATGAGTTTCACCTCCATTTTAGGTGCAAACACTCATCAGTTACCTGGTTTGGAGCTTGGATTGTCCCAAGATGCTCATATTGGAGCTATCAATCCTCAAGCATTGAACCAGATTTATCAACAAATGGGACAGGCTAGAGTTCATCAACATCAAAATCAAGCTCAACACCATCAACAGCAACCTCCTGCTAAAGATGATTCTCAAGATTCAGGGTAG | 810 | 49.38 | MGENKPAEIKDFQIAIAEKEQGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPTSAMAASGSISQHGVSISAGLQQKLEELGGGGGSSRVNWGNLGRPHLAPTATGLWASPVSGLGFQSSTSGIVAQSATNLANETSNYFHKLGFPPFELSPTNMGPMSFTSILGANTHQLPGLELGLSQDAHIGAINPQALNQIYQQMGQARVHQHQNQAQHHQQQPPAKDDSQDSG | 269 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 3815520 | 3818218 | - | Sed0024351.1 | Sed06g0434 | 716977 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g0434 | 269 | MobiDBLite | consensus disorder prediction | 240 | 269 | - | - | |
Sed06g0434 | 269 | MobiDBLite | consensus disorder prediction | 19 | 42 | - | - | |
Sed06g0434 | 269 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 25 | 258 | IPR005333 | GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
Sed06g0434 | 269 | ProSiteProfiles | TCP domain profile. | 33 | 87 | IPR017887 | - | |
Sed06g0434 | 269 | Pfam | TCP family transcription factor | 32 | 227 | IPR017887 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g2197 | Sed-Chr4:35942929 | Sed06g0434 | Sed-Chr6:3815520 | 7.60E-30 | dispersed | |
Sed06g0434 | Sed-Chr6:3815520 | Sed09g0363 | Sed-Chr9:3297146 | 6.80E-32 | dispersed | |
Sed06g0434 | Sed-Chr6:3815520 | Sed07g0108 | Sed-Chr7:1018315 | 9.50E-42 | wgd | |
Sed06g0434 | Sed-Chr6:3815520 | Sed08g1502 | Sed-Chr8:29579047 | 3.90E-112 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38816 | PF03634 | TCP | 6.30E-32 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g0434 | - | - | - | 0.0 |