Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0444 ATGGGGAAGAACGAATTTCTAACCCCAAAAGCGATCGCAAACAGAATCAAGGCAAAAGGGCTCCAAAAGCTCAGATGGTATTGCCAGATGTGTCAAAAGCAATGCCGAGATGAGAATGGATTTAAATGTCACTGTATGAGCGAAAGCCACCAGCGCCAAATGCAGATCTTTGGCCAAAACCCCCATCGGATTGTCGAAGGTTATACCGAAGAGTTCGAGAAATCTTTCATGGAGCACGTTAAGCGCAGCCATCGGTTTAGTCGCGTGGCGGCTACCGTGGTGTACAATGAGTATATTAACGATAGACATCATATTCATATGAATTCTACCGAGTGGGCTACTCTCACTGAGTTTGTGAAGCATTTGGGTCGAACTGGGCAGTGTAAGGTGGAGGAGACTCCCAAGGGTTGGTTCATTACTTACATCGATAGGGACTCGGAGACGGTTTTTAAGGAGAGAATGAAAAATAAGAGGATAAGGGCAGATTTAGCTGAAGAAGAGAAGCAAGAGAGAGAGATAAAGAGGCAAATTGAGAGAGCTGAGCAATTAGCTCCTTTGGGTCCTGTACCTGCTGAGCCTTTGGAGGTTGAGAAGTCGAAAGAGTTGAAATTGGAGAGTGGGGTTAAGCTCGGATTTGCTCTAGGAACAACATCAAAATTGAAGGAGAAAGGACAGAGTTCCATGGCGGTTTTTGACGAGGATGAGACCGACGAGATTGCCAATGGGAAACCAAAACATGGTGAGGCTTCCAAAAACAAGGTGGGTGGTGGTGGTTTGTCAGCTTTGGAAGCAATGATGAGAGAAGAAGAGATGAAGAAGGAGAAGATAAATAGGAGGGATTACTGGCTCTATGAGGGAATAATTGTGAAGGTCATGAGCAAGAATTTGGTTGAGAAAGGTTACTATAAACAAAAGGGAGTCGTGCGAAAAGTGATCGATAAATATGTTGGAGAGATCGAAATGCTCGATGTAAAGCATGTGTTGAGAGTTGATCAAGAAGAACTAGAAACAGTGATACCACAAATTGGTGGCTTAGTAAAGATAGTGAATGGGGCGTATCGGGGATCGAATGCTAGGTTATTGGGCATTGATACCGAAAAGTTTTGTGCTAAAGTGCAAATCGAAAAGGGTTTGTACGATGGCCGGGTGCTTAAGGCTGTTGAATATGAAGATATCAGTAAACTTGCATCATAA 1194 43.8 MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQIFGQNPHRIVEGYTEEFEKSFMEHVKRSHRFSRVAATVVYNEYINDRHHIHMNSTEWATLTEFVKHLGRTGQCKVEETPKGWFITYIDRDSETVFKERMKNKRIRADLAEEEKQEREIKRQIERAEQLAPLGPVPAEPLEVEKSKELKLESGVKLGFALGTTSKLKEKGQSSMAVFDEDETDEIANGKPKHGEASKNKVGGGGLSALEAMMREEEMKKEKINRRDYWLYEGIIVKVMSKNLVEKGYYKQKGVVRKVIDKYVGEIEMLDVKHVLRVDQEELETVIPQIGGLVKIVNGAYRGSNARLLGIDTEKFCAKVQIEKGLYDGRVLKAVEYEDISKLAS 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3930189 3932016 - Sed0019448.1 Sed06g0444 716987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0444 397 Coils Coil 259 279 - -
Sed06g0444 397 CDD KOW_KIN17 342 395 IPR041995 -
Sed06g0444 397 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 396 IPR037321 GO:0003690(PANTHER)|GO:0005634(PANTHER)|GO:0006260(PANTHER)|GO:0006974(PANTHER)
Sed06g0444 397 SMART Kin17_mid_2 52 178 IPR019447 -
Sed06g0444 397 Pfam KN17 SH3-like C-terminal domain 278 331 IPR041330 -
Sed06g0444 397 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
Sed06g0444 397 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
Sed06g0444 397 Gene3D - 60 159 IPR038254 -
Sed06g0444 397 FunFam DNA/RNA-binding protein kin17-like 286 339 - -
Sed06g0444 397 Gene3D - 286 339 - -
Sed06g0444 397 Coils Coil 154 183 - -
Sed06g0444 397 FunFam DNA/RNA-binding protein KIN17, putative 340 396 - -
Sed06g0444 397 Gene3D - 340 396 IPR014722 -
Sed06g0444 397 FunFam DNA/RNA-binding protein KIN17, putative 61 160 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0444 K13102 - csv:101216499 667.922