Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0513 ATGGAGTCAGTTGTTGATGGTATGAGTTCTTTACTGAAAACTCAGAACTCAACGTCTACATCGAGGATTCTTGATTCATCTTGCCACCCTTATCCTAAACAATCTAGGGATGAATCAACTTCTTCAACGTCCTACGCTACGTCTCAAAATTGTGCCGAGAAACCTGTTGGTCATTCAAATGGTTCTTCTGTAAATAATAAGAAACATCCTAACAATGTGAACCATGATGTGCGGCTTGAAGGTTCTACTGATGTGAAAAAACTTACACACGTTTTCAATAAGGGGAAGTCCGAGCTTGCAAACCCGATGGATATTTCATATAAGTCGACTGAAACTTCTTTCCAGAAGAAGGTTTCCTTGGAGGGAGGTGGAGCAAAGCCTCTTATGAAGCACATTATCGACGATTCTAAGGATTGTTGTTCAAGCAGCTCGGAAGAATCTGAAGTATTGAACGCATCAAAAGAAGCTGCTACACAAATAAATGATCAACAAAAGTCTCGGCTAGCTGAACTATCTTGTCCAAGTCCTCAGAACAGCTTATATTCCTCGACTTTGTATGCAGAAGCCAAACAAAGTTTCACAAACACAGAAGTCAGTGAATGTGTAAGCAGCATTGAAAAGTGTTGCAAAAGCACGGACATCACAAGTTCCTATGATCTTGACAAAAGCAGCAAAACGAGCGTATATCGAGGAAGCACAGGCAGTGATATCAGTGATGAGAGCAACTCAAGTAGTTTAAGCAATGCCATGTATAAGCCTCATATGGCAAATGATACAAGATGGGATGCAATACAAGTTGTTAGATCTCATGGTGGGACATTAGGGCTGAATAATTTCAGGTTGCTTCGGAGACTGGGATGTGGCGATATCGGTAGTGTGTACCTTTCAGAGTTAACTGGTACCAAAACTTACTTTGCCATTAAGGTTATGGATAAGGCTGCATTGGCAAGTAGGAAGAAGCTTCTGAGGGCGCAGACCGAGCGCGAGATATTGCAGTCTCTGGATCATCCGTTCCTGCCAACTCTGTATACACATTTTGAGACAGATAAGTTCTCTTGTTTGGTAATGGAGTTCTGCCCTGGGGGCGACTTACACGCGCTTAGGCAGAGACAACCTGGAAAGTTTTTTCCAGAGCATGCTGCAAGATTTTATGTGGCTGAAGTTCTCCTTGCTATGGAGTATCTGCACATGCTTGGGATAATCTACAGGGACCTAAAACCTGAAAATGTGTTGGTGAGAGGTGATGGGCACATAATGCTATCTGATTTTGACCTGTCTCTTAGATGCGCAGTTTCTCCAACCCTTGTTAAATCATCGAATTCGGGTTTAGAATCTAAAAGGTCAGGGTACTGTGCTCAGCCTGCTTGCATTGAGCCGACTTGTATAATGCCACCGGATTGTATCCAACCAGCATGTTTTACGCCCCGCTTCCTCAGTAGACACAAAAAAGAAAAGACGTCCAAACCAAAGAGTGAAGTGTATCATCAAGTGACCCCTCTTCCAGAGCTCATTGCCGAGCCCACGAGTGCGAGGTCGATGTCCTTTGTTGGTACACACGAGTACTTGGCACCTGAAATCATAAAGGGTGAAGGCCATGGCAGTGCCGTGGACTGGTGGACATTCGGAATCTTTCTCTATGAGCTTTTGTTCGGTAGAACTCCATTCAAGGGGGCCGGGAACCGTGCTACTTTGTTCAATGTGGTTGGTCAGCCATTGAGATTTCCAGAGTCTCCTTCTGTGAGCTTTGCAGCAAGAGACTTGATCAGAGGTTTGCTCGTAAAAGAACCACAGCACCGCCTCGCTTATAGGCGTGGTGCTACCGAGATCAAGCAACATCCATTCTTCCAGAGCGTGAATTGGGCACTCATCCGCTGCGCCAATCCTCCAGATGTGCCCAAAGCAGATGGCATTGATTTCTCTTCAAGAATGGAGTCGCCACAAACACCGGCAGGCGAAAAGACGGCCGGTGTCGATGTGAAGCCTACAGGAAATTATTTAGAGATCGACTTCTTTTGA 2016 44.89 MESVVDGMSSLLKTQNSTSTSRILDSSCHPYPKQSRDESTSSTSYATSQNCAEKPVGHSNGSSVNNKKHPNNVNHDVRLEGSTDVKKLTHVFNKGKSELANPMDISYKSTETSFQKKVSLEGGGAKPLMKHIIDDSKDCCSSSSEESEVLNASKEAATQINDQQKSRLAELSCPSPQNSLYSSTLYAEAKQSFTNTEVSECVSSIEKCCKSTDITSSYDLDKSSKTSVYRGSTGSDISDESNSSSLSNAMYKPHMANDTRWDAIQVVRSHGGTLGLNNFRLLRRLGCGDIGSVYLSELTGTKTYFAIKVMDKAALASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHALRQRQPGKFFPEHAARFYVAEVLLAMEYLHMLGIIYRDLKPENVLVRGDGHIMLSDFDLSLRCAVSPTLVKSSNSGLESKRSGYCAQPACIEPTCIMPPDCIQPACFTPRFLSRHKKEKTSKPKSEVYHQVTPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGAGNRATLFNVVGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQSVNWALIRCANPPDVPKADGIDFSSRMESPQTPAGEKTAGVDVKPTGNYLEIDFF 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4427113 4430956 - Sed0024197.1 Sed06g0513 717056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0513 671 FunFam Serine/threonine-protein kinase D6PK-like 277 362 - -
Sed06g0513 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 400 412 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g0513 671 Gene3D Transferase(Phosphotransferase) domain 1 363 430 - -
Sed06g0513 671 Gene3D Phosphorylase Kinase; domain 1 277 362 - -
Sed06g0513 671 MobiDBLite consensus disorder prediction 8 70 - -
Sed06g0513 671 MobiDBLite consensus disorder prediction 1 76 - -
Sed06g0513 671 Pfam Protein kinase domain 512 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0513 671 Pfam Protein kinase domain 280 429 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0513 671 CDD STKc_phototropin_like 279 638 - -
Sed06g0513 671 MobiDBLite consensus disorder prediction 224 249 - -
Sed06g0513 671 SMART serkin_6 279 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0513 671 PANTHER FLIPPASE KINASE 1-RELATED 141 638 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed06g0513 671 FunFam serine/threonine-protein kinase D6PK-like 363 430 - -
Sed06g0513 671 Gene3D Transferase(Phosphotransferase) domain 1 510 633 - -
Sed06g0513 671 FunFam serine/threonine-protein kinase D6PK-like 510 633 - -
Sed06g0513 671 SUPERFAMILY Protein kinase-like (PK-like) 251 634 IPR011009 -
Sed06g0513 671 ProSiteProfiles Protein kinase domain profile. 279 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0513 Sed-Chr6:4427113 Sed11g1164 Sed-Chr11:27556452 5.10E-193 dispersed
Sed06g0513 Sed-Chr6:4427113 Sed08g1411 Sed-Chr8:28759496 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79336 PF00069 Pkinase 2.40E-35 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0513 K08286 - csv:101219962 1112.44