Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g0513 | ATGGAGTCAGTTGTTGATGGTATGAGTTCTTTACTGAAAACTCAGAACTCAACGTCTACATCGAGGATTCTTGATTCATCTTGCCACCCTTATCCTAAACAATCTAGGGATGAATCAACTTCTTCAACGTCCTACGCTACGTCTCAAAATTGTGCCGAGAAACCTGTTGGTCATTCAAATGGTTCTTCTGTAAATAATAAGAAACATCCTAACAATGTGAACCATGATGTGCGGCTTGAAGGTTCTACTGATGTGAAAAAACTTACACACGTTTTCAATAAGGGGAAGTCCGAGCTTGCAAACCCGATGGATATTTCATATAAGTCGACTGAAACTTCTTTCCAGAAGAAGGTTTCCTTGGAGGGAGGTGGAGCAAAGCCTCTTATGAAGCACATTATCGACGATTCTAAGGATTGTTGTTCAAGCAGCTCGGAAGAATCTGAAGTATTGAACGCATCAAAAGAAGCTGCTACACAAATAAATGATCAACAAAAGTCTCGGCTAGCTGAACTATCTTGTCCAAGTCCTCAGAACAGCTTATATTCCTCGACTTTGTATGCAGAAGCCAAACAAAGTTTCACAAACACAGAAGTCAGTGAATGTGTAAGCAGCATTGAAAAGTGTTGCAAAAGCACGGACATCACAAGTTCCTATGATCTTGACAAAAGCAGCAAAACGAGCGTATATCGAGGAAGCACAGGCAGTGATATCAGTGATGAGAGCAACTCAAGTAGTTTAAGCAATGCCATGTATAAGCCTCATATGGCAAATGATACAAGATGGGATGCAATACAAGTTGTTAGATCTCATGGTGGGACATTAGGGCTGAATAATTTCAGGTTGCTTCGGAGACTGGGATGTGGCGATATCGGTAGTGTGTACCTTTCAGAGTTAACTGGTACCAAAACTTACTTTGCCATTAAGGTTATGGATAAGGCTGCATTGGCAAGTAGGAAGAAGCTTCTGAGGGCGCAGACCGAGCGCGAGATATTGCAGTCTCTGGATCATCCGTTCCTGCCAACTCTGTATACACATTTTGAGACAGATAAGTTCTCTTGTTTGGTAATGGAGTTCTGCCCTGGGGGCGACTTACACGCGCTTAGGCAGAGACAACCTGGAAAGTTTTTTCCAGAGCATGCTGCAAGATTTTATGTGGCTGAAGTTCTCCTTGCTATGGAGTATCTGCACATGCTTGGGATAATCTACAGGGACCTAAAACCTGAAAATGTGTTGGTGAGAGGTGATGGGCACATAATGCTATCTGATTTTGACCTGTCTCTTAGATGCGCAGTTTCTCCAACCCTTGTTAAATCATCGAATTCGGGTTTAGAATCTAAAAGGTCAGGGTACTGTGCTCAGCCTGCTTGCATTGAGCCGACTTGTATAATGCCACCGGATTGTATCCAACCAGCATGTTTTACGCCCCGCTTCCTCAGTAGACACAAAAAAGAAAAGACGTCCAAACCAAAGAGTGAAGTGTATCATCAAGTGACCCCTCTTCCAGAGCTCATTGCCGAGCCCACGAGTGCGAGGTCGATGTCCTTTGTTGGTACACACGAGTACTTGGCACCTGAAATCATAAAGGGTGAAGGCCATGGCAGTGCCGTGGACTGGTGGACATTCGGAATCTTTCTCTATGAGCTTTTGTTCGGTAGAACTCCATTCAAGGGGGCCGGGAACCGTGCTACTTTGTTCAATGTGGTTGGTCAGCCATTGAGATTTCCAGAGTCTCCTTCTGTGAGCTTTGCAGCAAGAGACTTGATCAGAGGTTTGCTCGTAAAAGAACCACAGCACCGCCTCGCTTATAGGCGTGGTGCTACCGAGATCAAGCAACATCCATTCTTCCAGAGCGTGAATTGGGCACTCATCCGCTGCGCCAATCCTCCAGATGTGCCCAAAGCAGATGGCATTGATTTCTCTTCAAGAATGGAGTCGCCACAAACACCGGCAGGCGAAAAGACGGCCGGTGTCGATGTGAAGCCTACAGGAAATTATTTAGAGATCGACTTCTTTTGA | 2016 | 44.89 | MESVVDGMSSLLKTQNSTSTSRILDSSCHPYPKQSRDESTSSTSYATSQNCAEKPVGHSNGSSVNNKKHPNNVNHDVRLEGSTDVKKLTHVFNKGKSELANPMDISYKSTETSFQKKVSLEGGGAKPLMKHIIDDSKDCCSSSSEESEVLNASKEAATQINDQQKSRLAELSCPSPQNSLYSSTLYAEAKQSFTNTEVSECVSSIEKCCKSTDITSSYDLDKSSKTSVYRGSTGSDISDESNSSSLSNAMYKPHMANDTRWDAIQVVRSHGGTLGLNNFRLLRRLGCGDIGSVYLSELTGTKTYFAIKVMDKAALASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHALRQRQPGKFFPEHAARFYVAEVLLAMEYLHMLGIIYRDLKPENVLVRGDGHIMLSDFDLSLRCAVSPTLVKSSNSGLESKRSGYCAQPACIEPTCIMPPDCIQPACFTPRFLSRHKKEKTSKPKSEVYHQVTPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGAGNRATLFNVVGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQSVNWALIRCANPPDVPKADGIDFSSRMESPQTPAGEKTAGVDVKPTGNYLEIDFF | 671 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 4427113 | 4430956 | - | Sed0024197.1 | Sed06g0513 | 717056 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g0513 | 671 | FunFam | Serine/threonine-protein kinase D6PK-like | 277 | 362 | - | - | |
Sed06g0513 | 671 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 400 | 412 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed06g0513 | 671 | Gene3D | Transferase(Phosphotransferase) domain 1 | 363 | 430 | - | - | |
Sed06g0513 | 671 | Gene3D | Phosphorylase Kinase; domain 1 | 277 | 362 | - | - | |
Sed06g0513 | 671 | MobiDBLite | consensus disorder prediction | 8 | 70 | - | - | |
Sed06g0513 | 671 | MobiDBLite | consensus disorder prediction | 1 | 76 | - | - | |
Sed06g0513 | 671 | Pfam | Protein kinase domain | 512 | 615 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g0513 | 671 | Pfam | Protein kinase domain | 280 | 429 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g0513 | 671 | CDD | STKc_phototropin_like | 279 | 638 | - | - | |
Sed06g0513 | 671 | MobiDBLite | consensus disorder prediction | 224 | 249 | - | - | |
Sed06g0513 | 671 | SMART | serkin_6 | 279 | 615 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g0513 | 671 | PANTHER | FLIPPASE KINASE 1-RELATED | 141 | 638 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
Sed06g0513 | 671 | FunFam | serine/threonine-protein kinase D6PK-like | 363 | 430 | - | - | |
Sed06g0513 | 671 | Gene3D | Transferase(Phosphotransferase) domain 1 | 510 | 633 | - | - | |
Sed06g0513 | 671 | FunFam | serine/threonine-protein kinase D6PK-like | 510 | 633 | - | - | |
Sed06g0513 | 671 | SUPERFAMILY | Protein kinase-like (PK-like) | 251 | 634 | IPR011009 | - | |
Sed06g0513 | 671 | ProSiteProfiles | Protein kinase domain profile. | 279 | 615 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g0513 | Sed-Chr6:4427113 | Sed11g1164 | Sed-Chr11:27556452 | 5.10E-193 | dispersed | |
Sed06g0513 | Sed-Chr6:4427113 | Sed08g1411 | Sed-Chr8:28759496 | 0.00E+00 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79336 | PF00069 | Pkinase | 2.40E-35 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g0513 | K08286 | - | csv:101219962 | 1112.44 |