Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0516 ATGCTTCAAATCCACAAACTACTTTCTCTCTCCAAACACAATCATCAAAACAGAGAATATCTCAAAAAAAAAAAGATAGGAACAATGGATTGCTTGCTTTGCGATGAATTAATCCAAGAAATTTTCCAAAAGCTGCCGTCGCCGTCGTCCGCCGCCGTGTCTCTCGTCTCTAAGCGGTGGCTCCGCCTCTACCGGACCTCCAAAACCGCCCTTTCTCTCCGCCTCTCCGATTCCTCTGTAATTTCATCTCTCTCTTCTCTTCTCTCCCACTACCCTTTTCTCTCCTCCCTCTCAATTATCTCCGGCGACCCCTCCGCCGTGCCCTCCTCCGCGCCGGCCGCCCTTATCATCCCGGAAATCCGCCGCCTCTGTTCAAATCTCCAAACTCTAACCCTCCTCGCCGGCCCTGTTTCTCTCTCCTCCCTTGTTTCCTTCTCCTCTTCTTTCCCCCATCTCACTTCCCTCTCAATCGCCGTTTCCCGGCCGTTGAACTTCCGGTGGGTTTGTAATTTTCCGGCGCTGAAATCTCTGTCGGTCTCCGTGGGTTTTGAAATCGAGTTCAATTCCGGCGATTCGGAGTGGGAATCGGCGGAATTGGGGATTCGGAGTCTCTGTATCTCCGGCCTCCGCGCCGGCGATTGGGGCGCCGGGTGGCTGTGGCGGAGCTGCAGGAATCTCCGGCGATTGGAGCTTTGTGGGTGTGAGACCGTCGGCGATGGTGGGTCGTTTTCGTCGTTTGTTGAGTGCTTGCCGGAGCTTCGGGCGGTGGAGCTTAGGACTTGCCGGAGCATCGCCGATGGCGTTCTGATGAAATTGGCGGAGAATTGCCGGAATCTTTCGTCACTTCTTGTCTACGACGGCGGCAGTCGGGAAGGTCTCCTCCGATTCCTCAACCACCACCAATGCCAATTGAGCTGCCTCGATCTCCGCCTTCCTCTCGACCTCGACAACAACCACCTCATCGCCATTGCCATGAACCTCCGCACCCTCTCATCTCTCCGGTTGCAGAGTTGTTGCCTCGTCAACGGCGATGGCCTAAAAGCCATTAGCGCAATCCTTGGCTCTCGCCTCGAGGAATTAGCATTAATTAACTGCGACGTCCTCGAACGAGAGTCCGGGTTGCTACCCACCCTAGGGCAGAGTCTGAAGCAATTGAAGAGTCTCGACTTATCTTACAACGAGTTGTTGCTCGACAAGGACTTTGGCTCCGTGATCATCTCTTGCAGCTCGATTAAAGAGCTCAAACTCCGGGGTTGCAAGAGCTTGACTGGAGCTGCTGTTTTTGCAATGTGGAAGAGCTGCAAGAATTTGGAGGCCATTGACATTGTTCAATGTCCTAAAATTCAGGTCAATGCATTGGAGATTTATGTGATGAATTTGCCAAAATTGAAGCAACTTAAGGTTGACGACGACAAGATTTCCGACGTCATGAGGAGCTCGGCCTCGCGCCGATTTGTCGATATTGTTGTTTGA 1473 52.75 MLQIHKLLSLSKHNHQNREYLKKKKIGTMDCLLCDELIQEIFQKLPSPSSAAVSLVSKRWLRLYRTSKTALSLRLSDSSVISSLSSLLSHYPFLSSLSIISGDPSAVPSSAPAALIIPEIRRLCSNLQTLTLLAGPVSLSSLVSFSSSFPHLTSLSIAVSRPLNFRWVCNFPALKSLSVSVGFEIEFNSGDSEWESAELGIRSLCISGLRAGDWGAGWLWRSCRNLRRLELCGCETVGDGGSFSSFVECLPELRAVELRTCRSIADGVLMKLAENCRNLSSLLVYDGGSREGLLRFLNHHQCQLSCLDLRLPLDLDNNHLIAIAMNLRTLSSLRLQSCCLVNGDGLKAISAILGSRLEELALINCDVLERESGLLPTLGQSLKQLKSLDLSYNELLLDKDFGSVIISCSSIKELKLRGCKSLTGAAVFAMWKSCKNLEAIDIVQCPKIQVNALEIYVMNLPKLKQLKVDDDKISDVMRSSASRRFVDIVV 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4488897 4491737 + Sed0007166.1 Sed06g0516 717059

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0516 490 SMART LRR_CC_2 223 249 IPR006553 -
Sed06g0516 490 SMART LRR_CC_2 250 275 IPR006553 -
Sed06g0516 490 SMART LRR_CC_2 382 407 IPR006553 -
Sed06g0516 490 SMART LRR_CC_2 124 148 IPR006553 -
Sed06g0516 490 SMART LRR_CC_2 408 433 IPR006553 -
Sed06g0516 490 SMART LRR_CC_2 434 459 IPR006553 -
Sed06g0516 490 SUPERFAMILY RNI-like 73 475 - -
Sed06g0516 490 SUPERFAMILY F-box domain 31 89 IPR036047 GO:0005515(InterPro)
Sed06g0516 490 Gene3D Ribonuclease Inhibitor 8 488 IPR032675 -
Sed06g0516 490 Pfam F-box domain 32 62 IPR001810 GO:0005515(InterPro)
Sed06g0516 490 PANTHER UNCHARACTERIZED 32 468 - GO:0019005(PANTHER)|GO:0031146(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0516 K10268 - - csv:101218456 621.698
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g405 . . Bda03g01248 . . Bpe14g01357 . . Cmo08g01154 Cmo17g00271 . . . . . . . . . . . . . . Cla06g00531 Cam06g0572 Cec06g0570 Cco06g0578 Clacu06g0560 Cmu06g0554 Cre06g1322 . Cone15ag0808 . . . . Chy11g01444 . . . . . . . . . Sed06g0516 . . Cma08g01183 . Car08g01059 Car17g00259 Cpe12g00236 Cpe17g00113 Bhi12g01780 Tan06g2588 Cmetu07g1857 Lac12g2348 . . . . . . . . . . . . . Cme11g01949
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009625 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 32