Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g0519 | ATGGCGGGTCTTGAGGAACTCAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGCCTTTCTATTATGGATTCCTATACGAATAGCCAGATTCACTTGGTTCAGAATGCTACTCAAAGTAAAGCAGCTCAGAACATAACAGAACAAAATGCCAAACTATTTTGGCTCAGAATGCCAAACTCTCTTGGCTCAGAATGCCAAACTATCTTGGCTCAGAAATTGCCCATACCGAGCAACTCACAGAGATACTCAAATCTCTTAGAAGATAAGGCCTTAGTTAGAATATCTGCAGGATTTGGTTCATTGGCCGATGTCTTGCACTCCAAGAGATGTATACCCAAGCCTGTCCTTTCATCATGTTTCACAAACTTCTTCATGTATGAAAAACTAACTGGTACCATTTTCATTTTTAAGGGTCTAAGTTATCTGCATGGAGTAACACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTTCTAAATCTAATGGGTGAAGCGAAAACTATGGATTTCGGCATGAGTTCTGGCTTTGAGAGTCCCCAAGGGGTGGCACAACGAATTCGAAACGAGAGCTATTCTTATCCAGCCGACATTTGGAACCTTGGGCTTGCACTCTTCGAGCGTGGTACAGGTGAATTTCCATACTCAGCTGCTGAAGATCTAGTGAACCTTATGTTACAGATTTTGGCTGACCCATCTCCATCACCATCAAAACAGAAGTTTTCACCAGAATTTTGCTCATTTGTTGATGTCTGCTTGCAGAAAGATTCAGATTCTAGGCCGACAGCAGAGCAGCTGGTTTCACACCCATTTATCAAAAAATGTGAGGATGAACAAGTAGACTTGGCAGCATTTGTCCAGAATGTGTTTGATCCAATACAGAAGATGAAGGGCTTGGCAGATTACTTGCTATTTGATGGATCTGATGAGTTCTGGCACCATACAAAAGCTTTGTACAATGAAAGCTCAACTTTAAGTTTCTCAGGGAAGCAATTTTCTGGTCCAGATGATATCTTTGTGAAGCTATCAGACATTAGGAGCACATTAGCAGGAGTCTGGCCTCTCGAAAAACTAGTCCATGTCGTCGAAAAACTCCAAGCTCACGGTCGAGTCGGAGTCGCCATAAGGGTGTCTGGATCCTTCATCATCAACGGTGTACAAGTCGAGGGACTGACGAATTTTAAGGATCTCTCCATTGACATGGCGAGTAGGAAAATGGGATCCTTTCGGGAGCAGTTTATCGTCGAACCAAGCAACCTCATCGGGCAGTATTTCATAGCCAAACAAGAGGCTTTATGTCACTGCTGTTTGATCCAGGTATGTTCAATCCCTCAAGTAACTTTAATAGAGAAATTGTGCATCGAACCTACCCAATCGTTGTAA | 1389 | 42.33 | MAGLEELKKKLTPLFDAEKGLSIMDSYTNSQIHLVQNATQSKAAQNITEQNAKLFWLRMPNSLGSECQTILAQKLPIPSNSQRYSNLLEDKALVRISAGFGSLADVLHSKRCIPKPVLSSCFTNFFMYEKLTGTIFIFKGLSYLHGVTHLVHRDIKPANLLLNLMGEAKTMDFGMSSGFESPQGVAQRIRNESYSYPADIWNLGLALFERGTGEFPYSAAEDLVNLMLQILADPSPSPSKQKFSPEFCSFVDVCLQKDSDSRPTAEQLVSHPFIKKCEDEQVDLAAFVQNVFDPIQKMKGLADYLLFDGSDEFWHHTKALYNESSTLSFSGKQFSGPDDIFVKLSDIRSTLAGVWPLEKLVHVVEKLQAHGRVGVAIRVSGSFIINGVQVEGLTNFKDLSIDMASRKMGSFREQFIVEPSNLIGQYFIAKQEALCHCCLIQVCSIPQVTLIEKLCIEPTQSL | 462 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 4514259 | 4527184 | - | Sed0021568.1 | Sed06g0519 | 717062 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g0519 | 462 | FunFam | mitogen-activated protein kinase kinase 3 | 100 | 296 | - | - | |
Sed06g0519 | 462 | SUPERFAMILY | NTF2-like | 304 | 431 | IPR032710 | - | |
Sed06g0519 | 462 | Pfam | Protein kinase domain | 137 | 274 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g0519 | 462 | SMART | serkin_6 | 18 | 274 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g0519 | 462 | SUPERFAMILY | Protein kinase-like (PK-like) | 101 | 289 | IPR011009 | - | |
Sed06g0519 | 462 | ProSiteProfiles | Nuclear transport factor 2 domain profile. | 304 | 435 | IPR018222 | - | |
Sed06g0519 | 462 | Gene3D | - | 304 | 435 | - | - | |
Sed06g0519 | 462 | ProSiteProfiles | Protein kinase domain profile. | 1 | 274 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g0519 | 462 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 150 | 162 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed06g0519 | 462 | Gene3D | Transferase(Phosphotransferase) domain 1 | 132 | 303 | - | - | |
Sed06g0519 | 462 | PANTHER | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED | 101 | 299 | - | GO:0000165(PANTHER)|GO:0004708(PANTHER) | |
Sed06g0519 | 462 | FunFam | Mitogen-activated protein kinase kinase 3 | 292 | 436 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g0519 | Sed-Chr6:4514259 | Sed11g0009 | Sed-Chr11:81741 | 6.60E-35 | dispersed | |
Sed06g0519 | Sed-Chr6:4514259 | Sed08g1406 | Sed-Chr8:28700248 | 3.50E-153 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79337 | PF00069 | Pkinase | 7.50E-24 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g0519 | K20607 | - | csv:101217978 | 516.924 |