Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0519 ATGGCGGGTCTTGAGGAACTCAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGCCTTTCTATTATGGATTCCTATACGAATAGCCAGATTCACTTGGTTCAGAATGCTACTCAAAGTAAAGCAGCTCAGAACATAACAGAACAAAATGCCAAACTATTTTGGCTCAGAATGCCAAACTCTCTTGGCTCAGAATGCCAAACTATCTTGGCTCAGAAATTGCCCATACCGAGCAACTCACAGAGATACTCAAATCTCTTAGAAGATAAGGCCTTAGTTAGAATATCTGCAGGATTTGGTTCATTGGCCGATGTCTTGCACTCCAAGAGATGTATACCCAAGCCTGTCCTTTCATCATGTTTCACAAACTTCTTCATGTATGAAAAACTAACTGGTACCATTTTCATTTTTAAGGGTCTAAGTTATCTGCATGGAGTAACACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTTCTAAATCTAATGGGTGAAGCGAAAACTATGGATTTCGGCATGAGTTCTGGCTTTGAGAGTCCCCAAGGGGTGGCACAACGAATTCGAAACGAGAGCTATTCTTATCCAGCCGACATTTGGAACCTTGGGCTTGCACTCTTCGAGCGTGGTACAGGTGAATTTCCATACTCAGCTGCTGAAGATCTAGTGAACCTTATGTTACAGATTTTGGCTGACCCATCTCCATCACCATCAAAACAGAAGTTTTCACCAGAATTTTGCTCATTTGTTGATGTCTGCTTGCAGAAAGATTCAGATTCTAGGCCGACAGCAGAGCAGCTGGTTTCACACCCATTTATCAAAAAATGTGAGGATGAACAAGTAGACTTGGCAGCATTTGTCCAGAATGTGTTTGATCCAATACAGAAGATGAAGGGCTTGGCAGATTACTTGCTATTTGATGGATCTGATGAGTTCTGGCACCATACAAAAGCTTTGTACAATGAAAGCTCAACTTTAAGTTTCTCAGGGAAGCAATTTTCTGGTCCAGATGATATCTTTGTGAAGCTATCAGACATTAGGAGCACATTAGCAGGAGTCTGGCCTCTCGAAAAACTAGTCCATGTCGTCGAAAAACTCCAAGCTCACGGTCGAGTCGGAGTCGCCATAAGGGTGTCTGGATCCTTCATCATCAACGGTGTACAAGTCGAGGGACTGACGAATTTTAAGGATCTCTCCATTGACATGGCGAGTAGGAAAATGGGATCCTTTCGGGAGCAGTTTATCGTCGAACCAAGCAACCTCATCGGGCAGTATTTCATAGCCAAACAAGAGGCTTTATGTCACTGCTGTTTGATCCAGGTATGTTCAATCCCTCAAGTAACTTTAATAGAGAAATTGTGCATCGAACCTACCCAATCGTTGTAA 1389 42.33 MAGLEELKKKLTPLFDAEKGLSIMDSYTNSQIHLVQNATQSKAAQNITEQNAKLFWLRMPNSLGSECQTILAQKLPIPSNSQRYSNLLEDKALVRISAGFGSLADVLHSKRCIPKPVLSSCFTNFFMYEKLTGTIFIFKGLSYLHGVTHLVHRDIKPANLLLNLMGEAKTMDFGMSSGFESPQGVAQRIRNESYSYPADIWNLGLALFERGTGEFPYSAAEDLVNLMLQILADPSPSPSKQKFSPEFCSFVDVCLQKDSDSRPTAEQLVSHPFIKKCEDEQVDLAAFVQNVFDPIQKMKGLADYLLFDGSDEFWHHTKALYNESSTLSFSGKQFSGPDDIFVKLSDIRSTLAGVWPLEKLVHVVEKLQAHGRVGVAIRVSGSFIINGVQVEGLTNFKDLSIDMASRKMGSFREQFIVEPSNLIGQYFIAKQEALCHCCLIQVCSIPQVTLIEKLCIEPTQSL 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4514259 4527184 - Sed0021568.1 Sed06g0519 717062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0519 462 FunFam mitogen-activated protein kinase kinase 3 100 296 - -
Sed06g0519 462 SUPERFAMILY NTF2-like 304 431 IPR032710 -
Sed06g0519 462 Pfam Protein kinase domain 137 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0519 462 SMART serkin_6 18 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0519 462 SUPERFAMILY Protein kinase-like (PK-like) 101 289 IPR011009 -
Sed06g0519 462 ProSiteProfiles Nuclear transport factor 2 domain profile. 304 435 IPR018222 -
Sed06g0519 462 Gene3D - 304 435 - -
Sed06g0519 462 ProSiteProfiles Protein kinase domain profile. 1 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0519 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g0519 462 Gene3D Transferase(Phosphotransferase) domain 1 132 303 - -
Sed06g0519 462 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 101 299 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Sed06g0519 462 FunFam Mitogen-activated protein kinase kinase 3 292 436 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0519 Sed-Chr6:4514259 Sed11g0009 Sed-Chr11:81741 6.60E-35 dispersed
Sed06g0519 Sed-Chr6:4514259 Sed08g1406 Sed-Chr8:28700248 3.50E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79337 PF00069 Pkinase 7.50E-24 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0519 K20607 - csv:101217978 516.924