Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0519 ATGGCGGGTCTTGAGGAACTCAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGCCTTTCTATTATGGATTCCTATACGAATAGCCAGATTCACTTGGTTCAGAATGCTACTCAAAGTAAAGCAGCTCAGAACATAACAGAACAAAATGCCAAACTATTTTGGCTCAGAATGCCAAACTCTCTTGGCTCAGAATGCCAAACTATCTTGGCTCAGAAATTGCCCATACCGAGCAACTCACAGAGATACTCAAATCTCTTAGAAGATAAGGCCTTAGTTAGAATATCTGCAGGATTTGGTTCATTGGCCGATGTCTTGCACTCCAAGAGATGTATACCCAAGCCTGTCCTTTCATCATGTTTCACAAACTTCTTCATGTATGAAAAACTAACTGGTACCATTTTCATTTTTAAGGGTCTAAGTTATCTGCATGGAGTAACACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTTCTAAATCTAATGGGTGAAGCGAAAACTATGGATTTCGGCATGAGTTCTGGCTTTGAGAGTCCCCAAGGGGTGGCACAACGAATTCGAAACGAGAGCTATTCTTATCCAGCCGACATTTGGAACCTTGGGCTTGCACTCTTCGAGCGTGGTACAGGTGAATTTCCATACTCAGCTGCTGAAGATCTAGTGAACCTTATGTTACAGATTTTGGCTGACCCATCTCCATCACCATCAAAACAGAAGTTTTCACCAGAATTTTGCTCATTTGTTGATGTCTGCTTGCAGAAAGATTCAGATTCTAGGCCGACAGCAGAGCAGCTGGTTTCACACCCATTTATCAAAAAATGTGAGGATGAACAAGTAGACTTGGCAGCATTTGTCCAGAATGTGTTTGATCCAATACAGAAGATGAAGGGCTTGGCAGATTACTTGCTATTTGATGGATCTGATGAGTTCTGGCACCATACAAAAGCTTTGTACAATGAAAGCTCAACTTTAAGTTTCTCAGGGAAGCAATTTTCTGGTCCAGATGATATCTTTGTGAAGCTATCAGACATTAGGAGCACATTAGCAGGAGTCTGGCCTCTCGAAAAACTAGTCCATGTCGTCGAAAAACTCCAAGCTCACGGTCGAGTCGGAGTCGCCATAAGGGTGTCTGGATCCTTCATCATCAACGGTGTACAAGTCGAGGGACTGACGAATTTTAAGGATCTCTCCATTGACATGGCGAGTAGGAAAATGGGATCCTTTCGGGAGCAGTTTATCGTCGAACCAAGCAACCTCATCGGGCAGTATTTCATAGCCAAACAAGAGGCTTTATGTCACTGCTGTTTGATCCAGGTATGTTCAATCCCTCAAGTAACTTTAATAGAGAAATTGTGCATCGAACCTACCCAATCGTTGTAA 1389 42.33 MAGLEELKKKLTPLFDAEKGLSIMDSYTNSQIHLVQNATQSKAAQNITEQNAKLFWLRMPNSLGSECQTILAQKLPIPSNSQRYSNLLEDKALVRISAGFGSLADVLHSKRCIPKPVLSSCFTNFFMYEKLTGTIFIFKGLSYLHGVTHLVHRDIKPANLLLNLMGEAKTMDFGMSSGFESPQGVAQRIRNESYSYPADIWNLGLALFERGTGEFPYSAAEDLVNLMLQILADPSPSPSKQKFSPEFCSFVDVCLQKDSDSRPTAEQLVSHPFIKKCEDEQVDLAAFVQNVFDPIQKMKGLADYLLFDGSDEFWHHTKALYNESSTLSFSGKQFSGPDDIFVKLSDIRSTLAGVWPLEKLVHVVEKLQAHGRVGVAIRVSGSFIINGVQVEGLTNFKDLSIDMASRKMGSFREQFIVEPSNLIGQYFIAKQEALCHCCLIQVCSIPQVTLIEKLCIEPTQSL 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4514259 4527184 - Sed0021568.1 Sed06g0519 717062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0519 462 FunFam mitogen-activated protein kinase kinase 3 100 296 - -
Sed06g0519 462 SUPERFAMILY NTF2-like 304 431 IPR032710 -
Sed06g0519 462 Pfam Protein kinase domain 137 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0519 462 SMART serkin_6 18 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0519 462 SUPERFAMILY Protein kinase-like (PK-like) 101 289 IPR011009 -
Sed06g0519 462 ProSiteProfiles Nuclear transport factor 2 domain profile. 304 435 IPR018222 -
Sed06g0519 462 Gene3D - 304 435 - -
Sed06g0519 462 ProSiteProfiles Protein kinase domain profile. 1 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0519 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g0519 462 Gene3D Transferase(Phosphotransferase) domain 1 132 303 - -
Sed06g0519 462 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 101 299 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Sed06g0519 462 FunFam Mitogen-activated protein kinase kinase 3 292 436 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0519 K20607 - - csv:101217978 516.924
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0519 Sed-Chr6:4514259 Sed11g0009 Sed-Chr11:81741 6.60E-35 dispersed
Sed06g0519 Sed-Chr6:4514259 Sed08g1406 Sed-Chr8:28700248 3.50E-153 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g0890 . 29 354 MAP Kinase Kinase Gene Family AT4G26070 69.9 9.3e-135 477.6
Sed08g0891 . 29 354 MAP Kinase Kinase Gene Family AT4G26070 69.9 9.3e-135 477.6
Sed12g1735 . 18 350 MAP Kinase Kinase Gene Family AT4G26070 67.4 1.8e-133 473.4
Sed12g1736 . 18 350 MAP Kinase Kinase Gene Family AT4G26070 67.4 1.8e-133 473.4
Sed12g1737 . 18 350 MAP Kinase Kinase Gene Family AT4G26070 67.4 1.8e-133 473.4
Sed11g0009 . 32 356 MAP Kinase Kinase Gene Family AT4G26070 66.0 2.3e-125 446.4
Sed11g0012 . 32 356 MAP Kinase Kinase Gene Family AT4G26070 66.0 2.3e-125 446.4
Sed11g0010 . 32 312 MAP Kinase Kinase Gene Family AT4G26070 67.0 1.4e-109 394.0
Sed03g1751 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 54.7 1.8e-106 383.6
Sed11g0011 . 1 249 MAP Kinase Kinase Gene Family AT4G26070 65.2 1.6e-94 344.0
Sed03g1752 . 26 242 MAP Kinase Kinase Gene Family AT4G26070 52.5 5.6e-63 239.2
Sed08g0890 . 1 327 MAP Kinase Kinase Gene Family AT4G29810 69.0 3.5e-134 475.7
Sed08g0891 . 1 327 MAP Kinase Kinase Gene Family AT4G29810 69.0 3.5e-134 475.7
Sed12g1735 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 68.4 1.1e-132 470.7
Sed12g1736 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 68.4 1.1e-132 470.7
Sed12g1737 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 68.4 1.1e-132 470.7
Sed11g0009 . 6 330 MAP Kinase Kinase Gene Family AT4G29810 63.1 1.0e-117 421.0
Sed11g0012 . 6 330 MAP Kinase Kinase Gene Family AT4G29810 63.1 1.0e-117 421.0
Sed11g0010 . 6 313 MAP Kinase Kinase Gene Family AT4G29810 62.4 1.3e-109 394.0
Sed03g1751 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 58.8 1.5e-108 390.6
Sed11g0011 . 1 223 MAP Kinase Kinase Gene Family AT4G29810 65.6 4.8e-83 305.8
Sed03g1752 . 10 239 MAP Kinase Kinase Gene Family AT4G29810 58.8 6.3e-75 278.9
Sed08g1406 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 78.7 8.9e-227 783.9
Sed06g0519 . 101 432 MAP Kinase Kinase Gene Family AT5G40440 59.4 1.6e-111 401.0
Sed11g0011 . 35 247 MAP Kinase Kinase Gene Family AT5G40440 52.3 1.4e-57 221.9
Sed06g2275 . 1 360 MAP Kinase Kinase Gene Family AT1G51660 69.0 9.4e-133 471.1
Sed06g0045 . 68 352 MAP Kinase Kinase Gene Family AT1G51660 75.1 2.3e-123 439.9
Sed01g1782 . 3 313 MAP Kinase Kinase Gene Family AT1G51660 50.2 2.3e-83 307.0
Sed08g2774 . 52 320 MAP Kinase Kinase Gene Family AT1G51660 53.2 7.0e-80 295.4
Sed06g2275 . 1 360 MAP Kinase Kinase Gene Family AT3G21220 66.5 1.3e-128 457.2
Sed06g0045 . 66 352 MAP Kinase Kinase Gene Family AT3G21220 73.5 2.0e-124 443.4
Sed01g1782 . 32 311 MAP Kinase Kinase Gene Family AT3G21220 53.9 5.5e-82 302.4
Sed08g2774 . 52 316 MAP Kinase Kinase Gene Family AT3G21220 52.8 3.9e-80 296.2
Sed03g1751 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 82.8 4.2e-170 595.1
Sed12g1735 . 8 342 MAP Kinase Kinase Gene Family AT5G56580 60.5 6.3e-118 421.8
Sed12g1736 . 8 342 MAP Kinase Kinase Gene Family AT5G56580 60.5 6.3e-118 421.8
Sed12g1737 . 8 342 MAP Kinase Kinase Gene Family AT5G56580 60.5 6.3e-118 421.8
Sed08g0890 . 7 353 MAP Kinase Kinase Gene Family AT5G56580 58.6 1.2e-116 417.5
Sed08g0891 . 7 353 MAP Kinase Kinase Gene Family AT5G56580 58.6 1.2e-116 417.5
Sed11g0009 . 6 345 MAP Kinase Kinase Gene Family AT5G56580 55.8 1.6e-108 390.6
Sed11g0012 . 6 345 MAP Kinase Kinase Gene Family AT5G56580 55.8 1.6e-108 390.6
Sed03g1752 . 1 234 MAP Kinase Kinase Gene Family AT5G56580 83.4 2.0e-108 390.2
Sed11g0010 . 6 313 MAP Kinase Kinase Gene Family AT5G56580 55.2 1.5e-95 347.4
Sed11g0011 . 1 238 MAP Kinase Kinase Gene Family AT5G56580 60.4 3.3e-82 303.1
Sed01g1782 . 1 307 MAP Kinase Kinase Gene Family AT1G18350 64.2 2.8e-106 382.9
Sed08g2774 . 1 314 MAP Kinase Kinase Gene Family AT1G18350 60.6 2.2e-103 373.2
Sed06g0045 . 68 325 MAP Kinase Kinase Gene Family AT1G18350 51.9 4.4e-75 279.3
Sed01g1782 . 1 295 MAP Kinase Kinase Gene Family AT3G06230 51.6 5.8e-77 285.4
Sed08g2774 . 52 302 MAP Kinase Kinase Gene Family AT3G06230 56.1 2.9e-76 283.1
Sed01g1782 . 1 307 MAP Kinase Kinase Gene Family AT1G73500 66.7 7.7e-112 401.4
Sed08g2774 . 1 314 MAP Kinase Kinase Gene Family AT1G73500 63.7 6.1e-109 391.7
Sed06g0045 . 69 325 MAP Kinase Kinase Gene Family AT1G73500 52.1 1.1e-76 284.6
Sed06g2275 . 72 331 MAP Kinase Kinase Gene Family AT1G73500 51.7 5.2e-76 282.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0067491 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79337 PF00069 Pkinase 7.50E-24 CL0016 Sed PK