Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0520 ATGTTGAATCAACTGCTTACACAAAGGAAGGAAAGGGAAAAAAGTTATTGGAAGATGTCTTCTTCCACCTACTCCAATTCTCCCTGTGCAGCCTGCAAGTTCCTTCGGCGTAAATGCCTTCCCGATTGCGTTTTTGCACCGTATTTCCCTCCCGAGGAGCCACAAAAGTTCGCCAACGTTCACAAGATATTCGGTGCCAGCAATGTCAGCAAACTGCTCAATGAAGTCCAGCCGCATCAGCGGGAGGATGCTGTGAACTCGCTCGCCTATGAGGCCGAGGCGAGGATGAAAGACCCCGTTTATGGCTGTGTTGGCGCAATCTCCATCCTCCAAAGGCAAGTCATCAAGCTACAGAAAGAACTCGACGCCACGAACGCCAACCTCATTCGCTATGCCTGCAGTGAAATTCCCACACCGTCCCCATCCTCGTCGTCACAATATGCTCGAAGATCATCGTCGACGAGCCACGAGGGAACCTCATCTACCTCTAGTTATGGGCACTATTATTCTGGCCCCTACTTTTCTCCATGGAGTAACAACCATGGCCCTTGTGGAGATGGCCATGACAAAGGAGAATACAAGTAA 585 50.26 MLNQLLTQRKEREKSYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEIPTPSPSSSSQYARRSSSTSHEGTSSTSSYGHYYSGPYFSPWSNNHGPCGDGHDKGEYK 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4546939 4549622 + Sed0023490.1 Sed06g0520 717063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0520 194 ProSiteProfiles LOB domain profile. 27 128 IPR004883 -
Sed06g0520 194 Coils Coil 107 127 - -
Sed06g0520 194 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 26 145 - -
Sed06g0520 194 MobiDBLite consensus disorder prediction 137 163 - -
Sed06g0520 194 Pfam Lateral organ boundaries (LOB) domain 28 125 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1628 Sed-Chr1:11844777 Sed06g0520 Sed-Chr6:4546939 1.00E-34 dispersed
Sed03g0120 Sed-Chr3:760565 Sed06g0520 Sed-Chr6:4546939 3.70E-54 dispersed
Sed06g0520 Sed-Chr6:4546939 Sed08g0088 Sed-Chr8:496474 9.20E-55 dispersed
Sed06g0520 Sed-Chr6:4546939 Sed06g0521 Sed-Chr6:4548646 8.00E-99 tandem
Sed07g1322 Sed-Chr7:10111309 Sed06g0520 Sed-Chr6:4546939 1.50E-21 transposed
Sed12g2463 Sed-Chr12:34257423 Sed06g0520 Sed-Chr6:4546939 2.40E-57 wgd
Sed03g0119 Sed-Chr3:759494 Sed06g0520 Sed-Chr6:4546939 3.70E-54 wgd
Sed06g0520 Sed-Chr6:4546939 Sed08g1405 Sed-Chr8:28698955 5.20E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38820 PF03195 LOB 3.10E-42 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0520 - - - 0.0