Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g0520 | ATGTTGAATCAACTGCTTACACAAAGGAAGGAAAGGGAAAAAAGTTATTGGAAGATGTCTTCTTCCACCTACTCCAATTCTCCCTGTGCAGCCTGCAAGTTCCTTCGGCGTAAATGCCTTCCCGATTGCGTTTTTGCACCGTATTTCCCTCCCGAGGAGCCACAAAAGTTCGCCAACGTTCACAAGATATTCGGTGCCAGCAATGTCAGCAAACTGCTCAATGAAGTCCAGCCGCATCAGCGGGAGGATGCTGTGAACTCGCTCGCCTATGAGGCCGAGGCGAGGATGAAAGACCCCGTTTATGGCTGTGTTGGCGCAATCTCCATCCTCCAAAGGCAAGTCATCAAGCTACAGAAAGAACTCGACGCCACGAACGCCAACCTCATTCGCTATGCCTGCAGTGAAATTCCCACACCGTCCCCATCCTCGTCGTCACAATATGCTCGAAGATCATCGTCGACGAGCCACGAGGGAACCTCATCTACCTCTAGTTATGGGCACTATTATTCTGGCCCCTACTTTTCTCCATGGAGTAACAACCATGGCCCTTGTGGAGATGGCCATGACAAAGGAGAATACAAGTAA | 585 | 50.26 | MLNQLLTQRKEREKSYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEIPTPSPSSSSQYARRSSSTSHEGTSSTSSYGHYYSGPYFSPWSNNHGPCGDGHDKGEYK | 194 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 4546939 | 4549622 | + | Sed0023490.1 | Sed06g0520 | 717063 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g0520 | 194 | ProSiteProfiles | LOB domain profile. | 27 | 128 | IPR004883 | - | |
Sed06g0520 | 194 | Coils | Coil | 107 | 127 | - | - | |
Sed06g0520 | 194 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 26 | 145 | - | - | |
Sed06g0520 | 194 | MobiDBLite | consensus disorder prediction | 137 | 163 | - | - | |
Sed06g0520 | 194 | Pfam | Lateral organ boundaries (LOB) domain | 28 | 125 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1628 | Sed-Chr1:11844777 | Sed06g0520 | Sed-Chr6:4546939 | 1.00E-34 | dispersed | |
Sed03g0120 | Sed-Chr3:760565 | Sed06g0520 | Sed-Chr6:4546939 | 3.70E-54 | dispersed | |
Sed06g0520 | Sed-Chr6:4546939 | Sed08g0088 | Sed-Chr8:496474 | 9.20E-55 | dispersed | |
Sed06g0520 | Sed-Chr6:4546939 | Sed06g0521 | Sed-Chr6:4548646 | 8.00E-99 | tandem | |
Sed07g1322 | Sed-Chr7:10111309 | Sed06g0520 | Sed-Chr6:4546939 | 1.50E-21 | transposed | |
Sed12g2463 | Sed-Chr12:34257423 | Sed06g0520 | Sed-Chr6:4546939 | 2.40E-57 | wgd | |
Sed03g0119 | Sed-Chr3:759494 | Sed06g0520 | Sed-Chr6:4546939 | 3.70E-54 | wgd | |
Sed06g0520 | Sed-Chr6:4546939 | Sed08g1405 | Sed-Chr8:28698955 | 5.20E-66 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38820 | PF03195 | LOB | 3.10E-42 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g0520 | - | - | - | 0.0 |