Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0521 ATGTCTTCTTCCACCTACTCCAATTCTCCCTGTGCAGCCTGCAAGTTCCTTCGGCGTAAATGCCTTCCCGATTGCGTTTTTGCACCGTATTTCCCTCCCGAGGAGCCACAAAAGTTCGCCAACGTTCACAAGATATTCGGTGCCAGCAATGTCAGCAAACTGCTCAATGAAGTCCAGCCGCATCAGCGGGAGGATGCTGTGAACTCGCTCGCCTATGAGGCCGAGGCGAGGATGAAAGACCCCGTTTATGGCTGTGTTGGCGCAATCTCCATCCTCCAAAGGCAAGTCATCAAGCTACAGAAAGAACTCGACGCCACGAACGCCAACCTCATTCGCTATGCCTGCAGTGAAATTCCCACACCGTCCCCATCCTCGTCGTCACAATATGCTCGAAGATCATCGTCGACGAGCCACGAGGGAACCTCATCTACCTCTAGTTATGGGCACTATTATTCTGGCCCCTACTTTTCTCCATGGAGTAACAACCATGGCCCTTGTGGAGATGGCCATGACAAAGGAGAATACAAGTAA 531 51.79 MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEIPTPSPSSSSQYARRSSSTSHEGTSSTSSYGHYYSGPYFSPWSNNHGPCGDGHDKGEYK 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4548646 4549622 + Sed0023490.2 Sed06g0521 717064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0521 176 Coils Coil 89 109 - -
Sed06g0521 176 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Sed06g0521 176 MobiDBLite consensus disorder prediction 119 145 - -
Sed06g0521 176 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Sed06g0521 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0119 Sed-Chr3:759494 Sed06g0521 Sed-Chr6:4548646 3.70E-54 dispersed
Sed06g0521 Sed-Chr6:4548646 Sed08g1405 Sed-Chr8:28698955 6.20E-66 dispersed
Sed06g0520 Sed-Chr6:4546939 Sed06g0521 Sed-Chr6:4548646 8.00E-99 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38821 PF03195 LOB 2.40E-42 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0521 - - - 0.0