Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0541 ATGTACGTCGGAGGCACTTACTACTCGGACGAACTTGTGGTTGGGGTGGCCGTTGCTGCGGCTGTGGTGTTGGTGGTGGTGGTGGTAGTTGTGGCTAGATATTTCTATTTAAAAAAGAAGAGGTACATCCCGCCTCTGCCGCCCGAGGCTAATGCCAGTGTCAGCGGGAAAGTACCACAGCCGTCACCGCGGCTGCCAGATGTCGAGGGCGGGGCAGTACCAATGCCGCGCTCTCCTATTATAAACAGCAGCAGCGGAGAGTCGGGATCTAATCCATTCGGGTCCGAAACGTCGTCGGCTTCTCCTAGTATTCTTGTGGGGTACTCGCAGAGCCGCCATTTCAGATATGAAGAGTTAGAAATTGCAACGGATGGGTTTTCAGAAGCCAATCTGCTTGGACAAGGTGGGTTTGGATATGTGCATAAAGGAGTTCTTTCAAATGGGAAGGAAGTGGCAGTGAAGCAACTTAAAGCTGGAAGTACACAGGGAGAACGTGAATTTCAAGCTGAAATTGAAATAATCAGCCGAGTTCATCATAGACATCTCGTTTCCTTGGTCGGATTTTGCATCACTGGCAATAAAAGATTGCTGGTTTATGAATTTGTTCCCAACAAAACATTGGAGTTTCATTTGCACGAGAAAGGACGACCTATCATGGATTGGCCAACCAGATTAAAAATTGCTTTTGGATCTGCTAAGGGATTGGCCTACCTTCATGAGGACTGCAATCCGAAGATCATTCATCGTGACATCAAAGGCGCAAATATACTCTTGGATTTGAACTTCATAGCAAAGGTTGCAGATTTTGGACTTGCCAAGATAACTTCTGATCTTGATACCCATGTTTCAACTCGAGTCTTGGGATCTTTTGGATATCTTGCTCCTGAATATGCTTCAAGTGGGAAACTCACCGAGAAATCAGATGTCTACTCCTTCGGAATAGTGCTTTTGGAGTTGATTACTGGACGAAGACCTCCCGAGGGATTGCTCGATTGGGCAAGGCCATTACTACTTCGAGCCATAAAAGATGGAAGCTACGACGGTCTAGTAGATCCAAAGCTGCAAGATAACTACGACCATAAACAAATGACATGCATGGTGACTTGCGCTACTGCCTGTGTGAATTATTGGGCGAAGCACCGACCACAGATGAGTCAGGTGGTTCAAGTTCTTGGAGGCGAAGCCTCGCTTTCGAACATCAACGAAGGGATCCAACCTGGACTTAGCACTGTCTATGGCTCTCCTGGTAACTTCCACAGCGACATGTCTAAGTACAATGAGAACCTGAATAAATTCAAGATGATGGCATTGGGAAATGGCGATAACGACCAAACATCGGGGGAAATGGAAACGACGATGACGACGAAGAACGAAAATGGAGATTTTAGTGCAAGTTCATGA 1401 46.61 MYVGGTYYSDELVVGVAVAAAVVLVVVVVVVARYFYLKKKRYIPPLPPEANASVSGKVPQPSPRLPDVEGGAVPMPRSPIINSSSGESGSNPFGSETSSASPSILVGYSQSRHFRYEELEIATDGFSEANLLGQGGFGYVHKGVLSNGKEVAVKQLKAGSTQGEREFQAEIEIISRVHHRHLVSLVGFCITGNKRLLVYEFVPNKTLEFHLHEKGRPIMDWPTRLKIAFGSAKGLAYLHEDCNPKIIHRDIKGANILLDLNFIAKVADFGLAKITSDLDTHVSTRVLGSFGYLAPEYASSGKLTEKSDVYSFGIVLLELITGRRPPEGLLDWARPLLLRAIKDGSYDGLVDPKLQDNYDHKQMTCMVTCATACVNYWAKHRPQMSQVVQVLGGEASLSNINEGIQPGLSTVYGSPGNFHSDMSKYNENLNKFKMMALGNGDNDQTSGEMETTMTTKNENGDFSASS 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4743255 4747822 + Sed0019344.1 Sed06g0541 717084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0541 466 MobiDBLite consensus disorder prediction 78 101 - -
Sed06g0541 466 FunFam Proline-rich receptor-like protein kinase PERK4 202 401 - -
Sed06g0541 466 ProSitePatterns Protein kinases ATP-binding region signature. 132 154 IPR017441 GO:0005524(InterPro)
Sed06g0541 466 MobiDBLite consensus disorder prediction 440 466 - -
Sed06g0541 466 CDD STKc_IRAK 132 391 - -
Sed06g0541 466 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 11 435 IPR047117 -
Sed06g0541 466 Gene3D Phosphorylase Kinase; domain 1 98 201 - -
Sed06g0541 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g0541 466 Gene3D Transferase(Phosphotransferase) domain 1 202 402 - -
Sed06g0541 466 SUPERFAMILY Protein kinase-like (PK-like) 101 391 IPR011009 -
Sed06g0541 466 PIRSF TyrPK_CSF1-R 7 43 - -
Sed06g0541 466 PIRSF TyrPK_CSF1-R 202 464 - -
Sed06g0541 466 PIRSF TyrPK_CSF1-R 117 220 - -
Sed06g0541 466 MobiDBLite consensus disorder prediction 52 101 - -
Sed06g0541 466 ProSiteProfiles Protein kinase domain profile. 126 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0541 466 SMART serkin_6 126 363 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0541 466 Pfam Protein tyrosine and serine/threonine kinase 130 391 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g0541 466 FunFam Proline-rich receptor-like protein kinase PERK8 97 201 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0541 Sed-Chr6:4743255 Sed11g0064 Sed-Chr11:603717 2.20E-139 dispersed
Sed11g1575 Sed-Chr11:31274647 Sed06g0541 Sed-Chr6:4743255 1.20E-50 dispersed
Sed11g1576 Sed-Chr11:31274647 Sed06g0541 Sed-Chr6:4743255 3.30E-46 dispersed
Sed12g2433 Sed-Chr12:34021080 Sed06g0541 Sed-Chr6:4743255 5.50E-154 wgd
Sed06g0541 Sed-Chr6:4743255 Sed06g1639 Sed-Chr6:41169743 1.20E-113 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79338 PF07714 PK_Tyr_Ser-Thr 6.00E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0541 - - - 0.0