Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0543 ATGAAAACAGCTAAAATGTTACGTCGTGTTGCTTCGGGTCTTCCTTGTTTGAAGCCTGTTAAAAAGAAGCTGGTCATGAGTTATGTGCCAGAGAAGAGATATCCTGTGAACTCAAAAGATTATAAGTTATACGAAGAAGTTGGTGATGGTGTTAGTGCAACTGTGTACAGGGCTCTTTGTATTCCATTAAATGAAATTGTTGCTATTAAGGTTCTTGACTTAGAGAGGTCCAATAATGACCTGGAAGGTACCCGTCGAGAAGTAAACACAATGACCTTGATTAATCATACCAATGTATTGCGAGCACATTGTTCTTTCCCTACAGGTCACAACCTTTGGATAGTGATGCCATTCATGGCTGGAGGATCATGCCTTCATATAATGAAATGGGCCCATCCAGAAGGACTTGAGGAGCCTGTTATAGTTATTTTGTTGCGCGAAGTCCTCAAAGCTCTTGTTTATCTTCATTTCCACGGTCACATTCACAGAGATGTGAAGGCTGGGAATATTTTAATTGATTCGAATGGTGCAGTCAAGCTAGCTGATTTTGGAGTGTCAGCCAGCATCTTTGATACTGGAGACAGACAACGTTCAAGAAATACTTTCGTGGGAACTCCTTGCTGGATGGCTCCTGAAGTTATGCAACAATTGAATGGGTATGACTTCAGGGCAGACATCTGGTCATTTGGAATAACTGCACTTGAACTTGCTCATGGACATGCCCCGTTTTCCAAATATCCACCAATGAAGGTTTTGCTGATGACCTTACAAAATGCACCTCCTGGTCTTCATTATGAACGAGACAAGAGATTCTCAAAGTCATTTAAAGAAATGGTAGCCACATGCCTAGTGAAGGATCCAAAAAAACGTCCTGAAGCAGAGAAGCTTTTAAAGCATTCATTTTTTAAACAAGGACAACCAAATGAATATCTTGTTCGCACTATTCTTCATGGTCTTCCATCTCTTGAAGCTCGCTTCAAGATGCTGAAGGAAAAAGAGGCCGAACTTCTTGGGCAGAACAAGACTCTATTTGGAGATAAAGAGCAACTGTCACAGAAAGAGTATATTCGAGGAGTGAGTGCCTGGAACTTCAACCTTGATGATTTAAAAAGTCAGGCTGGCCTTATTCAGGATGATGCAGTTATGAAGGTAAAGGACGTGGGAGTAAATGAAAGACAAGAAGATGAAAAGGAATTTAGATTTCATTCAGACCCTACACCCAGCTGTGAGGATGGGTGTGGTCTTCGTTATTTTGAGAGTTCATCTACTCCGCTTCCTATTAAGCCTATTGGAGTGGTAAATAATGACTATGAAATTTCTGAGGGAGATTTGAGTCATTTGACTGCAGATAATCAAACAGAAGATATAAACACAACTAAGCCGAGGGAGGTGGATCAAGACTATAGAACCGACGATTATACATCAAATGGAGCAGTAAAGGGGCACTCTAAAGTTTCTTCAGATCTCGGGGAAAAGGATTCTGCAGGCAACTTGTTTAATGCAGTTGGAAGTCTGATCCGTCCATCCCCCACAAACCTTTCAGCTTCCTCACTTCTCCCATCACTGCACTGCATTTTGCAGCAGAACGAGTTGCAGAGGGAAGAAATTATTAAGTCGCTGAAGTATCTGGGGCTAAGCTCTGGCATGAACAAAGATTTAGCGGAAGTGAGCATGACTGACTTATTGCAGATACCAACACCAGCGTCCTCTAGGGAGGGAGAATTATGGTCTCAAGTGATCCATCTTCATCAGAAGGTCAGCTCTCTCAATGAGGAATTATCTAAACAGAGGCTAAAAAATGCTCAGTTGGAGAGAAAACTGAATGCCTCGGTACGCAAAGAGGAAGCATTATGA 1854 41.86 MKTAKMLRRVASGLPCLKPVKKKLVMSYVPEKRYPVNSKDYKLYEEVGDGVSATVYRALCIPLNEIVAIKVLDLERSNNDLEGTRREVNTMTLINHTNVLRAHCSFPTGHNLWIVMPFMAGGSCLHIMKWAHPEGLEEPVIVILLREVLKALVYLHFHGHIHRDVKAGNILIDSNGAVKLADFGVSASIFDTGDRQRSRNTFVGTPCWMAPEVMQQLNGYDFRADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLHYERDKRFSKSFKEMVATCLVKDPKKRPEAEKLLKHSFFKQGQPNEYLVRTILHGLPSLEARFKMLKEKEAELLGQNKTLFGDKEQLSQKEYIRGVSAWNFNLDDLKSQAGLIQDDAVMKVKDVGVNERQEDEKEFRFHSDPTPSCEDGCGLRYFESSSTPLPIKPIGVVNNDYEISEGDLSHLTADNQTEDINTTKPREVDQDYRTDDYTSNGAVKGHSKVSSDLGEKDSAGNLFNAVGSLIRPSPTNLSASSLLPSLHCILQQNELQREEIIKSLKYLGLSSGMNKDLAEVSMTDLLQIPTPASSREGELWSQVIHLHQKVSSLNEELSKQRLKNAQLERKLNASVRKEEAL 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4774716 4787055 - Sed0017634.1 Sed06g0543 717086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0543 617 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 32 603 IPR047173 GO:0043539(InterPro)
Sed06g0543 617 SUPERFAMILY Protein kinase-like (PK-like) 39 324 IPR011009 -
Sed06g0543 617 FunFam serine/threonine-protein kinase BLUS1 isoform X1 122 355 - -
Sed06g0543 617 Coils Coil 586 613 - -
Sed06g0543 617 FunFam Serine/threonine-protein kinase BLUS1 30 118 - -
Sed06g0543 617 SMART serkin_6 41 302 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0543 617 Gene3D Transferase(Phosphotransferase) domain 1 122 349 - -
Sed06g0543 617 Pfam Protein kinase domain 41 302 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0543 617 MobiDBLite consensus disorder prediction 467 490 - -
Sed06g0543 617 ProSiteProfiles Protein kinase domain profile. 41 302 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0543 617 Gene3D Phosphorylase Kinase; domain 1 30 118 - -
Sed06g0543 617 ProSitePatterns Protein kinases ATP-binding region signature. 47 70 IPR017441 GO:0005524(InterPro)
Sed06g0543 617 CDD STKc_OSR1_SPAK 39 302 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0134 Sed-Chr3:849643 Sed06g0543 Sed-Chr6:4774716 8.90E-198 dispersed
Sed03g0135 Sed-Chr3:849643 Sed06g0543 Sed-Chr6:4774716 1.40E-129 dispersed
Sed04g2410 Sed-Chr4:37424817 Sed06g0543 Sed-Chr6:4774716 5.30E-52 dispersed
Sed05g1387 Sed-Chr5:26901591 Sed06g0543 Sed-Chr6:4774716 1.20E-147 dispersed
Sed06g0543 Sed-Chr6:4774716 Sed06g2046 Sed-Chr6:44514901 2.30E-136 dispersed
Sed06g0543 Sed-Chr6:4774716 Sed06g0544 Sed-Chr6:4774716 0.00E+00 tandem
Sed02g1388 Sed-Chr2:50091984 Sed06g0543 Sed-Chr6:4774716 1.80E-92 transposed
Sed03g0133 Sed-Chr3:849643 Sed06g0543 Sed-Chr6:4774716 8.90E-198 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79339 PF00069 Pkinase 1.30E-56 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0543 K08835 - ath:AT5G14720 678.322