Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0544 ATGAAAACAGCTAAAATGTTACGTCGTGTTGCTTCGGGTCTTCCTTGTTTGAAGCCTGTTAAAAAGAAGCTGGTCATGAGTTATGTGCCAGAGAAGAGATATCCTGTGAACTCAAAAGATTATAAGTTATACGAAGAAGTTGGTGATGGTGTTAGTGCAACTGTGTACAGGGCTCTTTGTATTCCATTAAATGAAATTGTTGCTATTAAGGTTCTTGACTTAGAGAGGTCCAATAATGACCTGGAAGGTACCCGTCGAGAAGTAAACACAATGACCTTGATTAATCATACCAATGTATTGCGAGCACATTGTTCTTTCCCTACAGGTCACAACCTTTGGATAGTGATGCCATTCATGGCTGGAGGATCATGCCTTCATATAATGAAATGGGCCCATCCAGAAGGACTTGAGGAGCCTGTTATAGTTATTTTGTTGCGCGAAGTCCTCAAAGCTCTTGTTTATCTTCATTTCCACGGTCACATTCACAGAGATGTGAAGGCTGGGAATATTTTAATTGATTCGAATGGTGCAGTCAAGCTAGCTGATTTTGGAGTGTCAGCCAGCATCTTTGATACTGGAGACAGACAACGTTCAAGAAATACTTTCGTGGGAACTCCTTGCTGGATGGCTCCTGAAGTTATGCAACAATTGAATGGGTATGACTTCAGGGCAGACATCTGGTCATTTGGAATAACTGCACTTGAACTTGCTCATGGACATGCCCCGTTTTCCAAATATCCACCAATGAAGGTTTTGCTGATGACCTTACAAAATGCACCTCCTGGTCTTCATTATGAACGAGACAAGAGATTCTCAAAGTCATTTAAAGAAATGGTAGCCACATGCCTAGTGAAGGATCCAAAAAAACGTCCTGAAGCAGAGAAGCTTTTAAAGCATTCATTTTTTAAACAAGGACAACCAAATGAATATCTTGTTCGCACTATTCTTCATGGTCTTCCATCTCTTGAAGCTCGCTTCAAGATGCTGAAGGAAAAAGAGGCCGAACTTCTTGGGCAGAACAAGACTCTATTTGGAGATAAAGAGCAACTGTCACAGAAAGAGTATATTCGAGGAGTGAGTGCCTGGAACTTCAACCTTGATGATTTAAAAAGTCAGGCTGGCCTTATTCAGGATGATGCAGTTATGAAGGTAAAGGACGTGGGAGTAAATGAAAGACAAGAAGATGAAAAGGAATTTAGATTTCATTCAGACCCTACACCCAGCTGTGAGGATGGGTGTGGTCTTCGTTATTTTGAGAGTTCATCTACTCCGCTTCCTATTAAGCCTATTGGAGTGGTAAATAATGACTATGAAATTTCTGAGGGAGATTTGAGTCATTTGACTGCAGATAATCAAACAGAAGATATAAACACAACTAAGCCGAGGGAGGTGGATCAAGACTATAGAACCGACGATTATACATCAAATGGAGCAGTAAAGGGGCACTCTAAAGTTTCTTCAGATCTCGGGGAAAAGGTTTGTGGCAACAAAAATGATTCTGCAGGCAACTTGTTTAATGCAGTTGGAAGTCTGATCCGTCCATCCCCCACAAACCTTTCAGCTTCCTCACTTCTCCCATCACTGCACTGCATTTTGCAGCAGAACGAGTTGCAGAGGGAAGAAATTATTAAGTCGCTGAAGTATCTGGGGCTAAGCTCTGGCATGAACAAAGATTTAGCGGAAGTGAGCATGACTGACTTATTGCAGATACCAACACCAGCGTCCTCTAGGGAGGGAGAATTATGGTCTCAAGTGATCCATCTTCATCAGAAGGTCAGCTCTCTCAATGAGGAATTATCTAAACAGAGGCTAAAAAATGCTCAGTTGGAGAGAAAACTGAATGCCTCGGTACGCAAAGAGGAAGCATTATGA 1872 41.77 MKTAKMLRRVASGLPCLKPVKKKLVMSYVPEKRYPVNSKDYKLYEEVGDGVSATVYRALCIPLNEIVAIKVLDLERSNNDLEGTRREVNTMTLINHTNVLRAHCSFPTGHNLWIVMPFMAGGSCLHIMKWAHPEGLEEPVIVILLREVLKALVYLHFHGHIHRDVKAGNILIDSNGAVKLADFGVSASIFDTGDRQRSRNTFVGTPCWMAPEVMQQLNGYDFRADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLHYERDKRFSKSFKEMVATCLVKDPKKRPEAEKLLKHSFFKQGQPNEYLVRTILHGLPSLEARFKMLKEKEAELLGQNKTLFGDKEQLSQKEYIRGVSAWNFNLDDLKSQAGLIQDDAVMKVKDVGVNERQEDEKEFRFHSDPTPSCEDGCGLRYFESSSTPLPIKPIGVVNNDYEISEGDLSHLTADNQTEDINTTKPREVDQDYRTDDYTSNGAVKGHSKVSSDLGEKVCGNKNDSAGNLFNAVGSLIRPSPTNLSASSLLPSLHCILQQNELQREEIIKSLKYLGLSSGMNKDLAEVSMTDLLQIPTPASSREGELWSQVIHLHQKVSSLNEELSKQRLKNAQLERKLNASVRKEEAL 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4774716 4787055 - Sed0017634.2 Sed06g0544 717087

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0544 623 Coils Coil 592 619 - -
Sed06g0544 623 SUPERFAMILY Protein kinase-like (PK-like) 39 324 IPR011009 -
Sed06g0544 623 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 32 609 IPR047173 GO:0043539(InterPro)
Sed06g0544 623 SMART serkin_6 41 302 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0544 623 Pfam Protein kinase domain 41 302 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0544 623 FunFam serine/threonine-protein kinase BLUS1 isoform X1 122 355 - -
Sed06g0544 623 FunFam Serine/threonine-protein kinase BLUS1 30 118 - -
Sed06g0544 623 ProSiteProfiles Protein kinase domain profile. 41 302 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0544 623 Gene3D Phosphorylase Kinase; domain 1 30 118 - -
Sed06g0544 623 ProSitePatterns Protein kinases ATP-binding region signature. 47 70 IPR017441 GO:0005524(InterPro)
Sed06g0544 623 Gene3D Transferase(Phosphotransferase) domain 1 122 349 - -
Sed06g0544 623 CDD STKc_OSR1_SPAK 39 302 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0544 K08835 - - mdm:103429120 673.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1388 Sed-Chr2:50091984 Sed06g0544 Sed-Chr6:4774716 1.80E-92 dispersed
Sed06g0544 Sed-Chr6:4774716 Sed06g2046 Sed-Chr6:44514901 6.90E-136 dispersed
Sed06g0543 Sed-Chr6:4774716 Sed06g0544 Sed-Chr6:4774716 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g2410 . 1 691 MAP Kinase Kinase Kinase Kinase AT1G53165 60.9 9.7e-216 747.7
Sed05g2557 . 1 691 MAP Kinase Kinase Kinase Kinase AT1G53165 60.5 5.9e-213 738.4
Sed07g2041 . 253 513 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 2.0e-67 255.0
Sed04g2410 . 1 690 MAP Kinase Kinase Kinase Kinase AT3G15220 63.0 1.8e-225 780.0
Sed05g2557 . 1 690 MAP Kinase Kinase Kinase Kinase AT3G15220 60.8 9.8e-216 747.7
Sed07g2041 . 253 513 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 8.9e-68 256.1
Sed07g2041 . 4 826 MAP Kinase Kinase Kinase Kinase AT1G69220 58.8 3.3e-239 825.9
Sed04g2410 . 23 267 MAP Kinase Kinase Kinase Kinase AT1G69220 52.0 1.5e-66 252.3
Sed03g0133 . 1 659 MAP Kinase Kinase Kinase Kinase AT5G14720 67.9 9.1e-251 864.0
Sed03g0134 . 1 659 MAP Kinase Kinase Kinase Kinase AT5G14720 67.9 9.1e-251 864.0
Sed06g0543 . 31 615 MAP Kinase Kinase Kinase Kinase AT5G14720 56.3 2.6e-189 659.8
Sed06g0544 . 31 621 MAP Kinase Kinase Kinase Kinase AT5G14720 55.8 1.9e-187 653.7
Sed03g0135 . 2 519 MAP Kinase Kinase Kinase Kinase AT5G14720 64.4 3.9e-177 619.4
Sed04g0924 . 7 720 MAP Kinase Kinase Kinase Kinase AT4G24100 63.4 5.8e-243 838.2
Sed04g0925 . 7 723 MAP Kinase Kinase Kinase Kinase AT4G24100 63.2 4.9e-242 835.1
Sed04g0926 . 1 653 MAP Kinase Kinase Kinase Kinase AT4G24100 62.4 3.0e-215 746.1
Sed06g0543 . 31 379 MAP Kinase Kinase Kinase Kinase AT4G24100 65.0 1.4e-132 471.5
Sed06g0544 . 31 379 MAP Kinase Kinase Kinase Kinase AT4G24100 65.0 1.4e-132 471.5
Sed04g0924 . 11 721 MAP Kinase Kinase Kinase Kinase AT4G10730 64.3 2.9e-244 842.4
Sed04g0925 . 11 724 MAP Kinase Kinase Kinase Kinase AT4G10730 64.1 6.5e-244 841.3
Sed04g0926 . 1 654 MAP Kinase Kinase Kinase Kinase AT4G10730 63.1 1.2e-216 750.7
Sed05g1387 . 4 367 MAP Kinase Kinase Kinase Kinase AT1G70430 61.5 1.6e-129 461.1
Sed04g0924 . 5 368 MAP Kinase Kinase Kinase Kinase AT1G70430 57.5 6.2e-118 422.5
Sed04g0925 . 5 368 MAP Kinase Kinase Kinase Kinase AT1G70430 57.5 6.2e-118 422.5
Sed05g1388 . 1 305 MAP Kinase Kinase Kinase Kinase AT1G70430 62.9 6.0e-113 406.0
Sed04g0926 . 1 301 MAP Kinase Kinase Kinase Kinase AT1G70430 60.9 1.7e-102 371.3
Sed05g1387 . 1 684 MAP Kinase Kinase Kinase Kinase AT1G79640 59.4 9.1e-211 731.1
Sed06g2046 . 1 649 MAP Kinase Kinase Kinase Kinase AT1G79640 58.0 1.2e-202 704.1
Sed05g1388 . 1 622 MAP Kinase Kinase Kinase Kinase AT1G79640 57.9 2.1e-183 640.2
Sed06g0543 . 31 378 MAP Kinase Kinase Kinase Kinase AT1G79640 68.4 3.9e-145 513.1
Sed06g0544 . 31 378 MAP Kinase Kinase Kinase Kinase AT1G79640 68.4 3.9e-145 513.1
Sed03g0133 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 9.2e-104 375.2
Sed03g0134 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 9.2e-104 375.2
Sed06g0543 . 26 352 MAP Kinase Kinase Kinase Kinase AT1G23700 57.6 6.4e-97 352.4
Sed06g0544 . 26 352 MAP Kinase Kinase Kinase Kinase AT1G23700 57.6 6.4e-97 352.4
Sed05g1387 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.9 5.6e-85 312.8
Sed04g0924 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.9 2.4e-75 280.8
Sed04g0925 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.9 2.4e-75 280.8
Sed05g1388 . 3 262 MAP Kinase Kinase Kinase Kinase AT1G23700 54.4 6.9e-75 279.3
Sed04g0926 . 1 239 MAP Kinase Kinase Kinase Kinase AT1G23700 53.7 1.4e-64 245.0
Sed03g0135 . 2 188 MAP Kinase Kinase Kinase Kinase AT1G23700 56.3 2.6e-50 197.6
Sed02g1388 . 30 496 MAP Kinase Kinase Kinase Kinase AT4G14480 57.4 1.5e-141 500.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017912 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 2 1 0 6
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79340 PF00069 Pkinase 1.30E-56 CL0016 Sed PK