Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g0547 | ATGGCGGTTCTGCAGCTTCCTTGTGCGAGGACCATTGGCGGTTCGTCTTCGCCATTGCTGAGAGGAAGTAAATCATCGTTGTTTCGTGGAAGAGATTTGCGCATTGGAAATCGAGGTATTAGGGATGATGATCCAAGAGTGAAAGCTCGAGTCAATGGCCGAGCTGTTAAGGTTTTCGCCACGTCGGATAGCTCTTCTTCTTCTTCTTCTTCTTCGTTCAAGATGAATCTCAATGAGTACATGGTTACTCTTGCGAAGCCGCTCGGTATTCGGTTCGCGATTTCCGTCGATGGGAGAATCCTCGTTCATTCGCTTAAGATAGGGGGTAATGCTGAGAAGTCAAGAATAATCATGGTGGGGGACACTTTAAAGAAGGCAAGCGATTCATCTGGCGTCAAGCTCATTGAGACCAAAGACTTCGGTGATATAGAGATGATGCTGAAGGAGAAAGCAGGGTCTTTTAGCCTTGTTCTTGAAAGGCCTGTCACTCCTTTTCCAATTCAAGAGTTTCTGATTTCAAACGATTTAGATATTTTATTTAATCGAGGTAGAGTCCCTATTGCTACTTGGAAGAAAGAAATTTTGGCATCGAATTTACAAACACTTGATGCAAACAGTGCGAATTCGGGGTTTGCGACTTTCTCCTCTAAGTTTTCAACATCACAAGGTTGGAAACTTCTTAATGATGAAAGTGGAGATGTCAAATCACCTATGCAGAGAAACATTCTCACGCCTCAGATCAGCCAGCTTGTTGGTATATTTACCGAAGAGGATCCTGGAGAAGGAGAATGGGCTCATGGGAGCTTCCCCTTAGATGAATATATCAAGGCATTAGAACGGTCTAAAGGGGAGCTGTATTATGATCATTCTCGTGGTATGAGCTATAGTAAGATCACAGAGCAAATTTATGTGGGGTCATGTTTACAGACTGAGGCAAACGTTGAGGCTTTGTCAAAAAACGTGGGAATCACCGCAGTTCTGAATTTTCAAAGTGCAACTGAGGCAGAAAACTGGAGGATTAGCTCCAAGTTAATCAATGAATCATGCCAAAAATTTGATATTCTCATGATCAACTATCCTATCAGGGATGGAGATTCTTATGATTTGCGGAAAAAACTACCATTTTGTGTGGGCCTACTTCTACGACTTTTAAAAAAGAACCATCGAGTATATGTAACTTGTACCACCGGTTTTGATCGATCTCCAGCAAGTGTGATTGCATATCTACACTGGATGACTGATACTTCTCTTCATGCAGCTTATAACTTTATCACCAGTTTGCATTCCTGCAAGCCTGACAGGCCAGCAATCGCTTGTGCTACCTGGGATCTCATAGCAATGGTGGAACATGGAAGGCATGATGGACCTCCTACCCATGCCATTACCTTCGTATGGAATGGACAAGAGGGGGAGGATGTAAATTTGGTAGGAGATTTTACTGGTAACTGGAAAGAACCGGTCAAGGCTAATCACAAGGGTGGGCCAAGATATGAAGTAGAAATGAAACTTCCTCAGGGAAAGTATTACTACAAATACATCATAAATGGTCAGTGGAGGCACTCGACAACTTCACCTGCTGAAAGAGATGATAAGGGGAATGTAAACAATGTTATAGTTATCGGTGACACTGCCAGTGTTAGGCCGTCAGTTCAACCGCAAAAAAAAGATGCAAATATTGTGAAGGTAATTGAAAGACCACTGACAGAAAATGAGCGGTTTATGCTGGCGAAAGCAGCTCGTTGTGTTGCATTTTCTGTATGTCCAATTAGACTAACTCCAAAGTAG | 1785 | 42.75 | MAVLQLPCARTIGGSSSPLLRGSKSSLFRGRDLRIGNRGIRDDDPRVKARVNGRAVKVFATSDSSSSSSSSSFKMNLNEYMVTLAKPLGIRFAISVDGRILVHSLKIGGNAEKSRIIMVGDTLKKASDSSGVKLIETKDFGDIEMMLKEKAGSFSLVLERPVTPFPIQEFLISNDLDILFNRGRVPIATWKKEILASNLQTLDANSANSGFATFSSKFSTSQGWKLLNDESGDVKSPMQRNILTPQISQLVGIFTEEDPGEGEWAHGSFPLDEYIKALERSKGELYYDHSRGMSYSKITEQIYVGSCLQTEANVEALSKNVGITAVLNFQSATEAENWRISSKLINESCQKFDILMINYPIRDGDSYDLRKKLPFCVGLLLRLLKKNHRVYVTCTTGFDRSPASVIAYLHWMTDTSLHAAYNFITSLHSCKPDRPAIACATWDLIAMVEHGRHDGPPTHAITFVWNGQEGEDVNLVGDFTGNWKEPVKANHKGGPRYEVEMKLPQGKYYYKYIINGQWRHSTTSPAERDDKGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK | 594 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 4800107 | 4808347 | + | Sed0002272.1 | Sed06g0547 | 717090 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g0547 | 594 | Gene3D | Immunoglobulins | 448 | 544 | IPR013783 | - | |
Sed06g0547 | 594 | CDD | E_set_AMPKbeta_like_N | 461 | 540 | - | - | |
Sed06g0547 | 594 | FunFam | Phosphoglucan phosphatase LSF1, chloroplastic | 448 | 544 | - | - | |
Sed06g0547 | 594 | SUPERFAMILY | E set domains | 458 | 541 | IPR014756 | - | |
Sed06g0547 | 594 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 286 | 430 | IPR029021 | - | |
Sed06g0547 | 594 | CDD | DSP_laforin-like | 293 | 437 | IPR045204 | GO:0019203(InterPro) | |
Sed06g0547 | 594 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 294 | 450 | IPR020422 | GO:0006470(InterPro) | |
Sed06g0547 | 594 | SMART | dsp_5 | 294 | 453 | IPR020422 | GO:0006470(InterPro) | |
Sed06g0547 | 594 | PANTHER | PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC | 60 | 588 | - | GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0043036(PANTHER) | |
Sed06g0547 | 594 | Pfam | Glycogen recognition site of AMP-activated protein kinase | 461 | 542 | IPR032640 | - | |
Sed06g0547 | 594 | Pfam | Dual specificity phosphatase, catalytic domain | 310 | 426 | IPR000340 | GO:0016311(InterPro) | |
Sed06g0547 | 594 | Gene3D | Protein tyrosine phosphatase superfamily | 287 | 553 | IPR029021 | - | |
Sed06g0547 | 594 | ProSiteProfiles | PDZ domain profile. | 81 | 162 | IPR001478 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g0547 | Sed-Chr6:4800107 | Sed06g2006 | Sed-Chr6:44156099 | 1.40E-29 | dispersed | |
Sed06g0547 | Sed-Chr6:4800107 | Sed06g0548 | Sed-Chr6:4800107 | 2.00E-270 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g0547 | - | - | - | 0.0 |