Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0547 ATGGCGGTTCTGCAGCTTCCTTGTGCGAGGACCATTGGCGGTTCGTCTTCGCCATTGCTGAGAGGAAGTAAATCATCGTTGTTTCGTGGAAGAGATTTGCGCATTGGAAATCGAGGTATTAGGGATGATGATCCAAGAGTGAAAGCTCGAGTCAATGGCCGAGCTGTTAAGGTTTTCGCCACGTCGGATAGCTCTTCTTCTTCTTCTTCTTCTTCGTTCAAGATGAATCTCAATGAGTACATGGTTACTCTTGCGAAGCCGCTCGGTATTCGGTTCGCGATTTCCGTCGATGGGAGAATCCTCGTTCATTCGCTTAAGATAGGGGGTAATGCTGAGAAGTCAAGAATAATCATGGTGGGGGACACTTTAAAGAAGGCAAGCGATTCATCTGGCGTCAAGCTCATTGAGACCAAAGACTTCGGTGATATAGAGATGATGCTGAAGGAGAAAGCAGGGTCTTTTAGCCTTGTTCTTGAAAGGCCTGTCACTCCTTTTCCAATTCAAGAGTTTCTGATTTCAAACGATTTAGATATTTTATTTAATCGAGGTAGAGTCCCTATTGCTACTTGGAAGAAAGAAATTTTGGCATCGAATTTACAAACACTTGATGCAAACAGTGCGAATTCGGGGTTTGCGACTTTCTCCTCTAAGTTTTCAACATCACAAGGTTGGAAACTTCTTAATGATGAAAGTGGAGATGTCAAATCACCTATGCAGAGAAACATTCTCACGCCTCAGATCAGCCAGCTTGTTGGTATATTTACCGAAGAGGATCCTGGAGAAGGAGAATGGGCTCATGGGAGCTTCCCCTTAGATGAATATATCAAGGCATTAGAACGGTCTAAAGGGGAGCTGTATTATGATCATTCTCGTGGTATGAGCTATAGTAAGATCACAGAGCAAATTTATGTGGGGTCATGTTTACAGACTGAGGCAAACGTTGAGGCTTTGTCAAAAAACGTGGGAATCACCGCAGTTCTGAATTTTCAAAGTGCAACTGAGGCAGAAAACTGGAGGATTAGCTCCAAGTTAATCAATGAATCATGCCAAAAATTTGATATTCTCATGATCAACTATCCTATCAGGGATGGAGATTCTTATGATTTGCGGAAAAAACTACCATTTTGTGTGGGCCTACTTCTACGACTTTTAAAAAAGAACCATCGAGTATATGTAACTTGTACCACCGGTTTTGATCGATCTCCAGCAAGTGTGATTGCATATCTACACTGGATGACTGATACTTCTCTTCATGCAGCTTATAACTTTATCACCAGTTTGCATTCCTGCAAGCCTGACAGGCCAGCAATCGCTTGTGCTACCTGGGATCTCATAGCAATGGTGGAACATGGAAGGCATGATGGACCTCCTACCCATGCCATTACCTTCGTATGGAATGGACAAGAGGGGGAGGATGTAAATTTGGTAGGAGATTTTACTGGTAACTGGAAAGAACCGGTCAAGGCTAATCACAAGGGTGGGCCAAGATATGAAGTAGAAATGAAACTTCCTCAGGGAAAGTATTACTACAAATACATCATAAATGGTCAGTGGAGGCACTCGACAACTTCACCTGCTGAAAGAGATGATAAGGGGAATGTAAACAATGTTATAGTTATCGGTGACACTGCCAGTGTTAGGCCGTCAGTTCAACCGCAAAAAAAAGATGCAAATATTGTGAAGGTAATTGAAAGACCACTGACAGAAAATGAGCGGTTTATGCTGGCGAAAGCAGCTCGTTGTGTTGCATTTTCTGTATGTCCAATTAGACTAACTCCAAAGTAG 1785 42.75 MAVLQLPCARTIGGSSSPLLRGSKSSLFRGRDLRIGNRGIRDDDPRVKARVNGRAVKVFATSDSSSSSSSSSFKMNLNEYMVTLAKPLGIRFAISVDGRILVHSLKIGGNAEKSRIIMVGDTLKKASDSSGVKLIETKDFGDIEMMLKEKAGSFSLVLERPVTPFPIQEFLISNDLDILFNRGRVPIATWKKEILASNLQTLDANSANSGFATFSSKFSTSQGWKLLNDESGDVKSPMQRNILTPQISQLVGIFTEEDPGEGEWAHGSFPLDEYIKALERSKGELYYDHSRGMSYSKITEQIYVGSCLQTEANVEALSKNVGITAVLNFQSATEAENWRISSKLINESCQKFDILMINYPIRDGDSYDLRKKLPFCVGLLLRLLKKNHRVYVTCTTGFDRSPASVIAYLHWMTDTSLHAAYNFITSLHSCKPDRPAIACATWDLIAMVEHGRHDGPPTHAITFVWNGQEGEDVNLVGDFTGNWKEPVKANHKGGPRYEVEMKLPQGKYYYKYIINGQWRHSTTSPAERDDKGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4800107 4808347 + Sed0002272.1 Sed06g0547 717090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0547 594 Gene3D Immunoglobulins 448 544 IPR013783 -
Sed06g0547 594 CDD E_set_AMPKbeta_like_N 461 540 - -
Sed06g0547 594 FunFam Phosphoglucan phosphatase LSF1, chloroplastic 448 544 - -
Sed06g0547 594 SUPERFAMILY E set domains 458 541 IPR014756 -
Sed06g0547 594 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 286 430 IPR029021 -
Sed06g0547 594 CDD DSP_laforin-like 293 437 IPR045204 GO:0019203(InterPro)
Sed06g0547 594 ProSiteProfiles Dual specificity protein phosphatase domain profile. 294 450 IPR020422 GO:0006470(InterPro)
Sed06g0547 594 SMART dsp_5 294 453 IPR020422 GO:0006470(InterPro)
Sed06g0547 594 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 60 588 - GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0043036(PANTHER)
Sed06g0547 594 Pfam Glycogen recognition site of AMP-activated protein kinase 461 542 IPR032640 -
Sed06g0547 594 Pfam Dual specificity phosphatase, catalytic domain 310 426 IPR000340 GO:0016311(InterPro)
Sed06g0547 594 Gene3D Protein tyrosine phosphatase superfamily 287 553 IPR029021 -
Sed06g0547 594 ProSiteProfiles PDZ domain profile. 81 162 IPR001478 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0547 Sed-Chr6:4800107 Sed06g2006 Sed-Chr6:44156099 1.40E-29 dispersed
Sed06g0547 Sed-Chr6:4800107 Sed06g0548 Sed-Chr6:4800107 2.00E-270 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0547 - - - 0.0