Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0548 ATGATGCTGAAGGAGAAAGCAGGGTCTTTTAGCCTTGTTCTTGAAAGGCCTGTCACTCCTTTTCCAATTCAAGAGTTTCTGATTTCAAACGATTTAGATATTTTATTTAATCGAGGTAGAGTCCCTATTGCTACTTGGAAGAAAGAAATTTTGGCATCGAATTTACAAACACTTGATGCAAACAGTGCGAATTCGGGGTTTGCGACTTTCTCCTCTAAGTTTTCAACATCACAAGGTTGGAAACTTCTTAATGATGAAAGTGGAGATGTCAAATCACCTATGCAGAGAAACATTCTCACGCCTCAGATCAGCCAGCTTGTTGGTATATTTACCGAAGAGGATCCTGGAGAAGGAGAATGGGCTCATGGGAGCTTCCCCTTAGATGAATATATCAAGGCATTAGAACGGTCTAAAGGGGAGCTGTATTATGATCATTCTCGTGGTATGAGCTATAGTAAGATCACAGAGCAAATTTATGTGGGGTCATGTTTACAGACTGAGGCAAACGTTGAGGCTTTGTCAAAAAACGTGGGAATCACCGCAGTTCTGAATTTTCAAAGTGCAACTGAGGCAGAAAACTGGAGGATTAGCTCCAAGTTAATCAATGAATCATGCCAAAAATTTGATATTCTCATGATCAACTATCCTATCAGGGATGGAGATTCTTATGATTTGCGGAAAAAACTACCATTTTGTGTGGGCCTACTTCTACGACTTTTAAAAAAGAACCATCGAGTATATGTAACTTGTACCACCGGTTTTGATCGATCTCCAGCAAGTGTGATTGCATATCTACACTGGATGACTGATACTTCTCTTCATGCAGCTTATAACTTTATCACCAGTTTGCATTCCTGCAAGCCTGACAGGCCAGCAATCGCTTGTGCTACCTGGGATCTCATAGCAATGGTGGAACATGGAAGGCATGATGGACCTCCTACCCATGCCATTACCTTCGTATGGAATGGACAAGAGGGGGAGGATGTAAATTTGGTAGGAGATTTTACTGGTAACTGGAAAGAACCGGTCAAGGCTAATCACAAGGGTGGGCCAAGATATGAAGTAGAAATGAAACTTCCTCAGGGAAAGTATTACTACAAATACATCATAAATGGTCAGTGGAGGCACTCGACAACTTCACCTGCTGAAAGAGATGATAAGGGGAATGTAAACAATGTTATAGTTATCGGTGACACTGCCAGTGTTAGGCCGTCAGTTCAACCGCAAAAAAAAGATGCAAATATTGTGAAGGTAATTGAAAGACCACTGACAGAAAATGAGCGGTTTATGCTGGCGAAAGCAGCTCGTTGTGTTGCATTTTCTGTATGTCCAATTAGACTAACTCCAAAGTAG 1353 41.32 MMLKEKAGSFSLVLERPVTPFPIQEFLISNDLDILFNRGRVPIATWKKEILASNLQTLDANSANSGFATFSSKFSTSQGWKLLNDESGDVKSPMQRNILTPQISQLVGIFTEEDPGEGEWAHGSFPLDEYIKALERSKGELYYDHSRGMSYSKITEQIYVGSCLQTEANVEALSKNVGITAVLNFQSATEAENWRISSKLINESCQKFDILMINYPIRDGDSYDLRKKLPFCVGLLLRLLKKNHRVYVTCTTGFDRSPASVIAYLHWMTDTSLHAAYNFITSLHSCKPDRPAIACATWDLIAMVEHGRHDGPPTHAITFVWNGQEGEDVNLVGDFTGNWKEPVKANHKGGPRYEVEMKLPQGKYYYKYIINGQWRHSTTSPAERDDKGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4800107 4808347 + Sed0002272.2 Sed06g0548 717091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0548 450 Pfam Glycogen recognition site of AMP-activated protein kinase 317 398 IPR032640 -
Sed06g0548 450 CDD E_set_AMPKbeta_like_N 317 396 - -
Sed06g0548 450 FunFam Phosphoglucan phosphatase LSF1, chloroplastic 304 400 - -
Sed06g0548 450 SMART dsp_5 150 309 IPR020422 GO:0006470(InterPro)
Sed06g0548 450 Gene3D Protein tyrosine phosphatase superfamily 143 409 IPR029021 -
Sed06g0548 450 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 142 286 IPR029021 -
Sed06g0548 450 Gene3D Immunoglobulins 304 400 IPR013783 -
Sed06g0548 450 SUPERFAMILY E set domains 314 397 IPR014756 -
Sed06g0548 450 CDD DSP_laforin-like 149 293 IPR045204 GO:0019203(InterPro)
Sed06g0548 450 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 1 444 - GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0043036(PANTHER)
Sed06g0548 450 ProSiteProfiles Dual specificity protein phosphatase domain profile. 150 306 IPR020422 GO:0006470(InterPro)
Sed06g0548 450 Pfam Dual specificity phosphatase, catalytic domain 166 282 IPR000340 GO:0016311(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0548 Sed-Chr6:4800107 Sed06g2006 Sed-Chr6:44156099 1.10E-29 dispersed
Sed06g0547 Sed-Chr6:4800107 Sed06g0548 Sed-Chr6:4800107 2.00E-270 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0548 - - - 0.0