Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g0548 | ATGATGCTGAAGGAGAAAGCAGGGTCTTTTAGCCTTGTTCTTGAAAGGCCTGTCACTCCTTTTCCAATTCAAGAGTTTCTGATTTCAAACGATTTAGATATTTTATTTAATCGAGGTAGAGTCCCTATTGCTACTTGGAAGAAAGAAATTTTGGCATCGAATTTACAAACACTTGATGCAAACAGTGCGAATTCGGGGTTTGCGACTTTCTCCTCTAAGTTTTCAACATCACAAGGTTGGAAACTTCTTAATGATGAAAGTGGAGATGTCAAATCACCTATGCAGAGAAACATTCTCACGCCTCAGATCAGCCAGCTTGTTGGTATATTTACCGAAGAGGATCCTGGAGAAGGAGAATGGGCTCATGGGAGCTTCCCCTTAGATGAATATATCAAGGCATTAGAACGGTCTAAAGGGGAGCTGTATTATGATCATTCTCGTGGTATGAGCTATAGTAAGATCACAGAGCAAATTTATGTGGGGTCATGTTTACAGACTGAGGCAAACGTTGAGGCTTTGTCAAAAAACGTGGGAATCACCGCAGTTCTGAATTTTCAAAGTGCAACTGAGGCAGAAAACTGGAGGATTAGCTCCAAGTTAATCAATGAATCATGCCAAAAATTTGATATTCTCATGATCAACTATCCTATCAGGGATGGAGATTCTTATGATTTGCGGAAAAAACTACCATTTTGTGTGGGCCTACTTCTACGACTTTTAAAAAAGAACCATCGAGTATATGTAACTTGTACCACCGGTTTTGATCGATCTCCAGCAAGTGTGATTGCATATCTACACTGGATGACTGATACTTCTCTTCATGCAGCTTATAACTTTATCACCAGTTTGCATTCCTGCAAGCCTGACAGGCCAGCAATCGCTTGTGCTACCTGGGATCTCATAGCAATGGTGGAACATGGAAGGCATGATGGACCTCCTACCCATGCCATTACCTTCGTATGGAATGGACAAGAGGGGGAGGATGTAAATTTGGTAGGAGATTTTACTGGTAACTGGAAAGAACCGGTCAAGGCTAATCACAAGGGTGGGCCAAGATATGAAGTAGAAATGAAACTTCCTCAGGGAAAGTATTACTACAAATACATCATAAATGGTCAGTGGAGGCACTCGACAACTTCACCTGCTGAAAGAGATGATAAGGGGAATGTAAACAATGTTATAGTTATCGGTGACACTGCCAGTGTTAGGCCGTCAGTTCAACCGCAAAAAAAAGATGCAAATATTGTGAAGGTAATTGAAAGACCACTGACAGAAAATGAGCGGTTTATGCTGGCGAAAGCAGCTCGTTGTGTTGCATTTTCTGTATGTCCAATTAGACTAACTCCAAAGTAG | 1353 | 41.32 | MMLKEKAGSFSLVLERPVTPFPIQEFLISNDLDILFNRGRVPIATWKKEILASNLQTLDANSANSGFATFSSKFSTSQGWKLLNDESGDVKSPMQRNILTPQISQLVGIFTEEDPGEGEWAHGSFPLDEYIKALERSKGELYYDHSRGMSYSKITEQIYVGSCLQTEANVEALSKNVGITAVLNFQSATEAENWRISSKLINESCQKFDILMINYPIRDGDSYDLRKKLPFCVGLLLRLLKKNHRVYVTCTTGFDRSPASVIAYLHWMTDTSLHAAYNFITSLHSCKPDRPAIACATWDLIAMVEHGRHDGPPTHAITFVWNGQEGEDVNLVGDFTGNWKEPVKANHKGGPRYEVEMKLPQGKYYYKYIINGQWRHSTTSPAERDDKGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK | 450 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 4800107 | 4808347 | + | Sed0002272.2 | Sed06g0548 | 717091 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g0548 | 450 | Pfam | Glycogen recognition site of AMP-activated protein kinase | 317 | 398 | IPR032640 | - | |
Sed06g0548 | 450 | CDD | E_set_AMPKbeta_like_N | 317 | 396 | - | - | |
Sed06g0548 | 450 | FunFam | Phosphoglucan phosphatase LSF1, chloroplastic | 304 | 400 | - | - | |
Sed06g0548 | 450 | SMART | dsp_5 | 150 | 309 | IPR020422 | GO:0006470(InterPro) | |
Sed06g0548 | 450 | Gene3D | Protein tyrosine phosphatase superfamily | 143 | 409 | IPR029021 | - | |
Sed06g0548 | 450 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 142 | 286 | IPR029021 | - | |
Sed06g0548 | 450 | Gene3D | Immunoglobulins | 304 | 400 | IPR013783 | - | |
Sed06g0548 | 450 | SUPERFAMILY | E set domains | 314 | 397 | IPR014756 | - | |
Sed06g0548 | 450 | CDD | DSP_laforin-like | 149 | 293 | IPR045204 | GO:0019203(InterPro) | |
Sed06g0548 | 450 | PANTHER | PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC | 1 | 444 | - | GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0043036(PANTHER) | |
Sed06g0548 | 450 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 150 | 306 | IPR020422 | GO:0006470(InterPro) | |
Sed06g0548 | 450 | Pfam | Dual specificity phosphatase, catalytic domain | 166 | 282 | IPR000340 | GO:0016311(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g0548 | Sed-Chr6:4800107 | Sed06g2006 | Sed-Chr6:44156099 | 1.10E-29 | dispersed | |
Sed06g0547 | Sed-Chr6:4800107 | Sed06g0548 | Sed-Chr6:4800107 | 2.00E-270 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g0548 | - | - | - | 0.0 |