Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0557 ATGAAAGAAAAGAGTGAAAGTGGAGGTGGGTATGTGAGGGCTGATCAAATAGATCTCAAGAGCTTAGATGAGCAGTTGCAGAGACATTTGAGCAAAGCATGGACTATGGAGAAGAACAAGAGGAAGGAGGATGAGGACGGCGGCGGCGGCGGTGGTGGAAGGCCGGCGAAGCAGGAGTGGGAGATCGACCCTTCTAAACTCATCATCAAAAGTGTTATTGCTCGTGGTACTTTTGGAACTGTTCATCGTGGGATTTATGATGGCCAGGATGTTGCTGTTAAACTTCTTGACTGGGGGGAAGAGGGTCATAGGTCAGAGGCAGAAATCGCATCTCTTAGAGCGGCTTTTACACAGGAAGTTGCTGTTTGGCACAAACTTGACCATCCTAATGTTACAAAGTTTATAGGAGCAACAATAGGCTCCTCAGATCTACAAATACAAACAGAAAACGGCCAAATTGGAATGCCAAGCAATATTTGTTGCGTTGTTGTTGAATATTGTCCTGGAGGTGCTCTAAAAACTTTCCTCATAAAGAACAGGAGGAAAAAGCTGGCTTTCAAAGTAGTCGTCCAGCTAGCATTAGACCTTGCACGAGGGTTGAGCTATCTTCATTCACAGAAGATTGTTCATAGAGACGTCAAAACAGAAAATATGCTTCTGGACAAAACGAGAACCGTAAAAATTGCAGACTTTGGCGTTGCTCGTGTTGAGGCCTCAAATCCCAATGACATGACTGGCGAGACCGGAACCTTGGGATACATGGCTCCAGAGGTTCTCAATGGCAATCCATATAACAGGAAATGTGATGTCTACAGCTTTGGCATCTGTTTGTGGGAAACATACTGCTGCGATATGCCGTATCCCGACCTTAGCTTCTCCGAAGTGACTTCAGCTGTTGTTCGACAGAATCTGAGGCCAGAGATTCCGCGGTGTTGCCCGAGCTCGCTTGCAAATGTAATGAAGCGATGTTGGGATGCTAACCCAGACAAGCGCCCCGAGATGGATGAGGTCGTAACCATGTTGGAAGCAATTGACACATCGAAGGGCGGAGGTATGATCCCCCTCGATCAGTCTCAAGGCTGTTTATGCTTCCGTAGGTACCGAGGGCCTTGA 1113 47.08 MKEKSESGGGYVRADQIDLKSLDEQLQRHLSKAWTMEKNKRKEDEDGGGGGGGRPAKQEWEIDPSKLIIKSVIARGTFGTVHRGIYDGQDVAVKLLDWGEEGHRSEAEIASLRAAFTQEVAVWHKLDHPNVTKFIGATIGSSDLQIQTENGQIGMPSNICCVVVEYCPGGALKTFLIKNRRKKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWETYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPDKRPEMDEVVTMLEAIDTSKGGGMIPLDQSQGCLCFRRYRGP 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4870613 4875940 + Sed0024437.1 Sed06g0557 717100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0557 370 SUPERFAMILY Protein kinase-like (PK-like) 56 341 IPR011009 -
Sed06g0557 370 Gene3D Phosphorylase Kinase; domain 1 56 151 - -
Sed06g0557 370 FunFam Kinase suppressor of Ras 1 56 151 - -
Sed06g0557 370 Gene3D Transferase(Phosphotransferase) domain 1 167 357 - -
Sed06g0557 370 MobiDBLite consensus disorder prediction 30 60 - -
Sed06g0557 370 MobiDBLite consensus disorder prediction 30 50 - -
Sed06g0557 370 PRINTS Tyrosine kinase catalytic domain signature 202 220 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g0557 370 PRINTS Tyrosine kinase catalytic domain signature 164 177 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g0557 370 PRINTS Tyrosine kinase catalytic domain signature 312 334 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g0557 370 PRINTS Tyrosine kinase catalytic domain signature 268 290 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g0557 370 CDD STKc_MAP3K-like 73 341 - -
Sed06g0557 370 SMART serkin_6 67 344 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0557 370 Pfam Protein tyrosine and serine/threonine kinase 69 341 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g0557 370 ProSiteProfiles Protein kinase domain profile. 67 344 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0557 370 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 48 342 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Sed06g0557 370 FunFam Serine/threonine-protein kinase HT1 167 352 - -
Sed06g0557 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0557 Sed-Chr6:4870613 Sed08g0135 Sed-Chr8:772472 1.10E-184 dispersed
Sed06g0557 Sed-Chr6:4870613 Sed12g1881 Sed-Chr12:30004010 1.00E-187 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79341 PF07714 PK_Tyr_Ser-Thr 1.80E-63 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0557 - - - 0.0