Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0563 ATGGATTCCGGTGGTCGGTTTTTGTTTAATCCGCCGGCTTGCGGCGGCAACATGCTTTACCTTGGCGGAGCCGGCGGCGATTCTTTTCTAAGAGGTGGAAGAACAATGTTGAACATGAGCATGCAGGAGAGTTCAAAGAAGCAACCATTTTTCCGATCCCCTGACGATATTTATGACGATGAGTATTACGACGAGCTTTACCCCGAGAAGAAGCGTCGCCTGACCAACAACCAGGTTCAAATGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGGAAGTCCCAACTGGCCAAGAAGCTCGGGCTGCAGCCGAGGCAGGTGGCCGTGTGGTTCCAAAACCGTCGTGCTCGGTGGAAGGCGAAGCAGCTCGAAAGAGACTATGATGTTCTCAAAGCTTCATATGATTTGCTCATGTCAAACTATGGCTCTATCGTCAAAGAGAATGCAGAGCTTAAATCTAAGATGGCTTCCTTGACTGAAAAATGTCTAGCAAAAGAGCTGGACGGAGGAGAAGCACCAATTCCATGTGTAACATCAGAGCCTCCTCTAGCAGACATCGCTCAAATCTCCGCCCCACTCACCGGCAGAAAGGCGGAAGATCGTCTAAGTTCGGGGAGCGATAACAGTGCAGTAAGCGACGATAATTGTCCAAACCTCATCGACAGCGGAGATTCTTACTTCCCGAGCAACGAGTACCCCCAGTGTACACCTCTGCCTACTACTGTGTTGCAAATGGAATATGATGATAGAAATTACAATAACAACCTGTTCTCAGATATGTTTGCACCAACAAACCAACAGAGTCAAGAGGGGGGACCTCAAGCTTGGTGGGCATGGCCTTAG 855 49.12 MDSGGRFLFNPPACGGNMLYLGGAGGDSFLRGGRTMLNMSMQESSKKQPFFRSPDDIYDDEYYDELYPEKKRRLTNNQVQMLEKSFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKAKQLERDYDVLKASYDLLMSNYGSIVKENAELKSKMASLTEKCLAKELDGGEAPIPCVTSEPPLADIAQISAPLTGRKAEDRLSSGSDNSAVSDDNCPNLIDSGDSYFPSNEYPQCTPLPTTVLQMEYDDRNYNNNLFSDMFAPTNQQSQEGGPQAWWAWP 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4920946 4925150 + Sed0018486.1 Sed06g0563 717106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0563 284 Gene3D - 65 131 - -
Sed06g0563 284 ProSiteProfiles 'Homeobox' domain profile. 65 125 IPR001356 GO:0003677(InterPro)
Sed06g0563 284 ProSitePatterns 'Homeobox' domain signature. 100 123 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed06g0563 284 Pfam Homeodomain 70 123 IPR001356 GO:0003677(InterPro)
Sed06g0563 284 CDD homeodomain 70 126 IPR001356 GO:0003677(InterPro)
Sed06g0563 284 PRINTS Lambda-repressor HTH signature 96 105 IPR000047 GO:0003677(InterPro)
Sed06g0563 284 PRINTS Lambda-repressor HTH signature 105 121 IPR000047 GO:0003677(InterPro)
Sed06g0563 284 SMART HOX_1 68 129 IPR001356 GO:0003677(InterPro)
Sed06g0563 284 Coils Coil 117 144 - -
Sed06g0563 284 FunFam homeobox-leucine zipper protein ATHB-6-like 73 119 - -
Sed06g0563 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 44 203 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Sed06g0563 284 Pfam Homeobox associated leucine zipper 125 165 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g0563 284 SUPERFAMILY Homeodomain-like 69 135 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0563 Sed-Chr6:4920946 Sed08g2572 Sed-Chr8:38233694 2.00E-29 dispersed
Sed11g1931 Sed-Chr11:33725685 Sed06g0563 Sed-Chr6:4920946 2.10E-49 wgd
Sed03g0139 Sed-Chr3:895749 Sed06g0563 Sed-Chr6:4920946 2.30E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38822 PF00046 Homeodomain 5.30E-18 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0563 K09338 - csv:101212142 425.246