Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0570 ATGGAACGCCACCAGATTCTGGAAAAATCCAAACTTGGTTTCTCATCTTCCTTCAAAGAAGCCTTCAAAATCCTTTTTGCTAATCCAAAATTCATCTTCATCACAATCTTCTTCAATTTCCCTCTTTTGGCCTCTCTCTTAGCTCACCACATCCTCCTTCACCCAACCTTCATTCAACTCCTCAAACTTCTCTACCATGGAAATCCTCTCAATCGACAAGTTTACATAGAGATCAGCTGCATAGGAACTACCTGCACCGGGCACGATCCCGACCCGGTCGAGAGCTTCGAAACAATTATCTCCCACAAGTTCCTGATCTCCACATTCCTATTCTCAGCAACCATCTACTTCCTTGACCTTCTCACCACAATTGCAACAGTCTCCATATCTGCAGCATTGTATGGAGGAAACTCCCAATTAGGGTTCAAGGAAATGGTGGCTCAAGCCACAAGGGTGGATCTGAAAGGCCCATTGGCTACATCTCTATGTGCTGTTTTGTTGGCTTCACTCACTTTGTTGGGTTTGGTTGCTTTGTCAATAAATGTGCTTTTAATGTCACCAGGCTCAGACATGTTTTTTATGTACATAGACATCATTTTTGTCTCCACGGTTATGATCCTCGTATTGATCTTTGGGCTGCCGTTTGTGATTTTGTTGGCGAAATATATAGAGTGGAGTTCTGTTTGGAATGTGGGAATTGTTATCTCCATCCTGGATAAGAACCGCGGCTATATCGCGATCGGGGTGGCATCGTATCTGAGCAGAGGTAGTAGAAAGCTTGGGTTTAATTTGATGATGGTTTTCTTTGTTTTGAAGGTGTTTTTGTGGCTACCCTATGTTTATACTTTGTGGAATGAGAGGAGTTGTGGGATTATTGGGAATGTGGTGTTTAGAAAACAGCCATGGCCATGCATCAAAGTTCTTGGCTATTACAAATCCACCTGGCTCTTTCCTCCTTATATCTCATTTCCTCCTAAACTTCTCATCCTTTTTCATCTTCCACAATCAACCCTCCCTCTCTTTCACATTTCAGGCCGGGCTGGCCCCCGGAATCCGCCATGGAAGATGAATAGAATCGTCGACTTGCCGGCGTACACATTCCGCCCCTTTCAGCGAAAGCTAATAGGCTCCTCAGATCCCGCGACGACGAAGCCTGCAGCCACCACCGTGGAGCACCCAAATTACATCCTCCTCCGCTACCAAATCCTCGATCCGGATAGTGACATTGTCGCGCTATGGAACCGAGTGTTTCTGGTTACGTGCTTGATTGCTTTGTTTATCGATCCACTATATTTCTACACGTCGTCGGTGGGCGGGCCGGCGTGTATGAGGACGGAGGTGAAGCTCGGAGTGGTGATCACGTTCTTTAGAACCGTCATGGATCTGTTCTACTTGTTGCACATGGTTTTGAAGTTTCGAACAGCCTATGTGTCTCCGAGTTCTAGGGTTTTTGGAAGGGGAGAACTGGTTATGGATGCGATAGCCATTTCTAAGCGTTATTTGAAATCTGATTTTATTATTGATCTTGCCGCCACACTCCCCCTCCCACAAATAATGATGTGGTTGGTGATTCCAGCATTAAGAAACTCAAGAGTGGATCATGCAAACAACACGGTCGCTCTCCTTGTTCTTCTCCAATACGTTCCAAGGCTTTTCCTCATCTTCCCTCTCAACAATCGCATCATCAAAACCACTGGTGTTGTTGCCAAGACTGCTTGGGCTGGTGCTGCCTATAATCTCATCCTCTACATGCTTGCTAGCCATATTTTGGGATCTACATGGTATCTGTTGTCCATAGGGAGACAATTCTCTTGCTGGAAAACAGAGTGTGCAAAGGAAAATGCCTCAAAACTTCTAACATGTCTTCCAAGCTTCTTGGATTGTGACAGTTTGAATAACATAGACCGAAAATATTGGCTTAATATCACTCATGTTACTTCCAACTGCGATCCTAGGAATGAAAATGTCAAGTTCAAGTTTGGAATGTTCTCAGATGCTTTCACCAATGATGTTGCCTCCTCTCATTTCTTTGCTAAGTTCTTTTATTGTCTCTGGTGGGGCCTCAGAAATTTAAGTTCATATGGACAAACTTTGGATACAACGACCTATATTGGCGAGACATTATTTTGCATATTAACCTGCATATTTGGCTTGATACTATCTTCACAACTCATTGGTAACATGCAGACATATTTGCAATCAATGACAATAAGACTAGAAGAATGGAGGATAAAGCGAAGGGACACCGAAGAATGGATGAGACGCCGCCAGTTACCTCCCGATTTGCAAGAACGAATTCGTCGATTCGTTCAATATAAATGGGTGGCCACAAGAGGAGTTAATGAAGAATCCTTATTGCGTTCGTTGCCTATAGACCTTCGTCGTGAGATTCAACAGCATTTGTGTTTGTCGCTCGTTCGTCGTGTTCCTTTCTTCTCACAAATGGATGATCAGCTTCTTGATGCAATATGTGAGCGGCTTGTTTCATCCTTGTGCACTGAAGGAATGCACATTGTGCGAGAAGATGACCCAGTTAACGAAATGTTGTTTATTATAAGAGGACAACTAGAAAGCTCCACAACAAATGGTGGCAGATCTGGATTTTTCAACTCTATCTTGCTAAAATCAGGTGACTTTTGTGGTGAAGAACTATTGACATGGGCGTTGATGCCGAGTTCGAGTTTGAATATGCCTTCTTCTACTCGAACTGTCCGAGCCCTTACGGAAGTTGAAGCTTTCGCTCTTCGAGCCGAGGACCTCAAGTTTGTTGCCGGGCAGTTCAAACGCCTGCATAGCAAGAAACTTCAACATGCCTTTAGATATTATTCCCATCAATGGAGGACATGGGGGGCTTGCTTGATTCAAGTAGCTTGGAGGAGGCTTCAGAAGAGAAAACTGGCAAAGACATTAGCATTGAGAGATAGCTCAAGCTACACAGATTTGATAGAACAAGATATTGAATACGATATTGAGCTAGCAGAAGAAAATTATGACGACAACGAAAACAACGACGATATGTCTCCTGCGGAGTTTATGAACAAAACTCAAAATCTAGGGGCCACAATTTTGGCTTCAAAGTTTGCTGCCAACACTAGAAGAGGAGTTAATCAAATAGGGAAATCATCCAAACCTTCCAGTTTGAAAATGCCAAAGTTGTTTAAGCCAGATGAACCTGACTTCTCTATGGATGGATGA 3195 43.6 MERHQILEKSKLGFSSSFKEAFKILFANPKFIFITIFFNFPLLASLLAHHILLHPTFIQLLKLLYHGNPLNRQVYIEISCIGTTCTGHDPDPVESFETIISHKFLISTFLFSATIYFLDLLTTIATVSISAALYGGNSQLGFKEMVAQATRVDLKGPLATSLCAVLLASLTLLGLVALSINVLLMSPGSDMFFMYIDIIFVSTVMILVLIFGLPFVILLAKYIEWSSVWNVGIVISILDKNRGYIAIGVASYLSRGSRKLGFNLMMVFFVLKVFLWLPYVYTLWNERSCGIIGNVVFRKQPWPCIKVLGYYKSTWLFPPYISFPPKLLILFHLPQSTLPLFHISGRAGPRNPPWKMNRIVDLPAYTFRPFQRKLIGSSDPATTKPAATTVEHPNYILLRYQILDPDSDIVALWNRVFLVTCLIALFIDPLYFYTSSVGGPACMRTEVKLGVVITFFRTVMDLFYLLHMVLKFRTAYVSPSSRVFGRGELVMDAIAISKRYLKSDFIIDLAATLPLPQIMMWLVIPALRNSRVDHANNTVALLVLLQYVPRLFLIFPLNNRIIKTTGVVAKTAWAGAAYNLILYMLASHILGSTWYLLSIGRQFSCWKTECAKENASKLLTCLPSFLDCDSLNNIDRKYWLNITHVTSNCDPRNENVKFKFGMFSDAFTNDVASSHFFAKFFYCLWWGLRNLSSYGQTLDTTTYIGETLFCILTCIFGLILSSQLIGNMQTYLQSMTIRLEEWRIKRRDTEEWMRRRQLPPDLQERIRRFVQYKWVATRGVNEESLLRSLPIDLRREIQQHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLCTEGMHIVREDDPVNEMLFIIRGQLESSTTNGGRSGFFNSILLKSGDFCGEELLTWALMPSSSLNMPSSTRTVRALTEVEAFALRAEDLKFVAGQFKRLHSKKLQHAFRYYSHQWRTWGACLIQVAWRRLQKRKLAKTLALRDSSSYTDLIEQDIEYDIELAEENYDDNENNDDMSPAEFMNKTQNLGATILASKFAANTRRGVNQIGKSSKPSSLKMPKLFKPDEPDFSMDG 1064
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4984924 4994267 - Sed0025994.1 Sed06g0570 717113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0570 1064 Gene3D Jelly Rolls 809 929 IPR014710 -
Sed06g0570 1064 Gene3D Helix hairpin bin 739 802 - -
Sed06g0570 1064 FunFam Cyclic nucleotide-gated ion channel 1 809 927 - -
Sed06g0570 1064 Coils Coil 983 1003 - -
Sed06g0570 1064 MobiDBLite consensus disorder prediction 1034 1064 - -
Sed06g0570 1064 SUPERFAMILY Voltage-gated potassium channels 404 733 - -
Sed06g0570 1064 CDD CAP_ED 811 942 IPR000595 -
Sed06g0570 1064 SUPERFAMILY cAMP-binding domain-like 741 936 IPR018490 -
Sed06g0570 1064 MobiDBLite consensus disorder prediction 1050 1064 - -
Sed06g0570 1064 SMART cnmp_10 811 942 IPR000595 -
Sed06g0570 1064 ProSiteProfiles cAMP/cGMP binding motif profile. 811 941 IPR000595 -
Sed06g0570 1064 Pfam Cyclic nucleotide-binding domain 835 921 IPR000595 -
Sed06g0570 1064 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 397 1040 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0570 Sed-Chr6:4984924 Sed08g0136 Sed-Chr8:777936 2.10E-262 dispersed
Sed06g0570 Sed-Chr6:4984924 Sed06g0571 Sed-Chr6:4994769 6.70E-147 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0570 K05391 - csv:101216651 1257.66