Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0572 ATGGATCTGGAGAGTGCAATTAGAGGAAACCCAATTAAGAAGGATTCATGGAGGGCGGTTTTAACTTTGGCTTATCAGAGTTTAGGGGTTGTTTATGGCGATTTGAGCACTTCCCCTTTGTATGTTTACAAAAGCACTTTTGCTGAGGATATTGAACACTCTGAAAGCAACGATGAGATTTATGGGGTTCTTTCTTTTGTGTTCTGGACTTTAACGCTAATTCCTTTGATTAAGTATGTTTTTATTGTGCTTCGAGCTGATGATAATGGCGAAGGGGGAACTTTCGCTTTGTATTCATTGCTCTGCCGCCATGCTCGAGTTAGTTCCTTGCCCAATTGTCAACTTGCAGATGAGGAACTTTCGGAGTATACAAAAGATGGGGTTGATTTAACGAGTAAGAATAATTGTGGGTCGAGGTTAAAATCGACATTAGAGAAGCATAGAGTGTTGCAGACGATTCTGCTTGTTCTTGCTTTGATTGGGGCTTGCATGGTGATTGGTGATGGTGTTCTTACCCCTGCTATTTCTGTTTTCTCTGCTGTTTCTGGGCTGGAATTTTCCATGGCCAAAGAACACCATCGCTATGTTGAAGTCCCGGTTGCTTGTGCTATATTGGTATTCCTGTTTGCACTTCAGCATTACGGAACCCATCGAGTCGGATTTCTGTTTGCACCAGTTGTAATTACCTGGCTCCTGTGTATCAGTGGCATAGGGTTGTACAATATTTTCTACTGGAATCCCCATGTCTTCCAAGCACTCTCCCCATATTATATGTACAAATTTCTGAAGAAGACTCAAAGGGGAGGTTGGATGTCCCTCGGCGGGATCCTGTTATGTATGACAGGTTCAGAAGCAATGTTTGCTGATCTCGGGCACTTCTCGCAGCTATCTATCCAGATTGCTTTCTCTTTTTTGGTTTATCCATCATTGGTCCTGGCATACATGGGACAAGCTGCTTATCTTTCTCAACATCACGGACAAGCTGACCATCGAATCGGATTTTACGTGTCTGTTCCTGAGAAAATAAGATGGCCCGTAATGGTGATCGCCATTTTAGCTGCAGTAGTTGGAAGTCAAGCTGTCATTACCGGGACCTTCTCAATAATAAAACAGTGCTCTGCATTAGGCTGCTTCCCAAGGGTCAAAATCGTTCATACGTCCTCGAAAATCCACGGCCAGATTTATATACCGGAGATCAACTGGACGTTGATGATCTTATGCTTGGCTATTACCTGTGGCTTTCGAGACACGAAGCGATTGGGAAATGCATCTGGTTTAGCAGTGATAACCGTAATGCTGGTAACTACCTGCCTAATGTCTGTAGTCATCATCTTGTGCTGGCACAAAAGCTTTCTCTTTGCCATTGCCTTCATGCTCATTTTTGGGTCCATCGAATCACTCTACTTCTCAGCATCTCTCATAAAGTTTCGAGAAGGAGCCTGGGTTCCCATCGCGCTCTCATTCATCTTCCTATTAGTCATGTATGTATGGCATTACGGAACGCGCAAGAAATACGAGTTCGACGTACAAAACAAAGTCTCAATCAACTGGCTCCTAGGCCTAGGTCCCGGCTTAGGCATCGTACGAGTACGTGGCATCGGCCTCATATACACGGAGCTCGTCTCAGGAATCCCCGCCATCTTCTCCCACTTCGTAACGAACCTCCCCGCCTTCCACGAGGTCCTGGTCTTCCTCTGCATAAAATCCGTCCCTGTCCCACACGTGAGACCTGGGGAGAGATTTCTCGTAGGAAGAGTCGGGCCAAAAGAGTTCCGTCTCTACCGATGCATAGCAAGATACGGGTACCGCGACATCCACAAGGACGACATGGAGTTCGAGAAGGACCTGGTGTGCAGCATTGCAGAGTTCATCCGGTCGGAGGAGGGGGAGACGAGCGTGAAGGTAGAGGCCGACGAGGAAGAGAGCGAGAGAATGAGGGTGGTGGGGACAAGCTCAACACATGTAGATGGAGTGAGGATGTGTGAGGATGAAGGAGGAGAGAGAGGAGAAACATCAGAGGTGAGAGAGATAAAGTCACCACAAAAGCTTAGAAAAAGAGTGAGGTTTCTTGTACCTGAGAGCCCAAAAATGGATGTTGAATCAAGGAAAGAGCTGCAAGAGCTAATGGAAGCAAGAGAGGCAGGAATGGCTTTCATAATGGGACATTCATATGTCAAAGCAAACAGAGGGTCAGGTTGGGTCAAGAAAATGGTCATAAATTATGGGTATGATTTTTTGAGAAGGAACTCAAGAGGGCCAAGCTATGCTTGGACTGTGCCTCATGCATCTACTTTAGAAGTGGGGATGATCTACCAAGTTTGA 2322 45.91 MDLESAIRGNPIKKDSWRAVLTLAYQSLGVVYGDLSTSPLYVYKSTFAEDIEHSESNDEIYGVLSFVFWTLTLIPLIKYVFIVLRADDNGEGGTFALYSLLCRHARVSSLPNCQLADEELSEYTKDGVDLTSKNNCGSRLKSTLEKHRVLQTILLVLALIGACMVIGDGVLTPAISVFSAVSGLEFSMAKEHHRYVEVPVACAILVFLFALQHYGTHRVGFLFAPVVITWLLCISGIGLYNIFYWNPHVFQALSPYYMYKFLKKTQRGGWMSLGGILLCMTGSEAMFADLGHFSQLSIQIAFSFLVYPSLVLAYMGQAAYLSQHHGQADHRIGFYVSVPEKIRWPVMVIAILAAVVGSQAVITGTFSIIKQCSALGCFPRVKIVHTSSKIHGQIYIPEINWTLMILCLAITCGFRDTKRLGNASGLAVITVMLVTTCLMSVVIILCWHKSFLFAIAFMLIFGSIESLYFSASLIKFREGAWVPIALSFIFLLVMYVWHYGTRKKYEFDVQNKVSINWLLGLGPGLGIVRVRGIGLIYTELVSGIPAIFSHFVTNLPAFHEVLVFLCIKSVPVPHVRPGERFLVGRVGPKEFRLYRCIARYGYRDIHKDDMEFEKDLVCSIAEFIRSEEGETSVKVEADEEESERMRVVGTSSTHVDGVRMCEDEGGERGETSEVREIKSPQKLRKRVRFLVPESPKMDVESRKELQELMEAREAGMAFIMGHSYVKANRGSGWVKKMVINYGYDFLRRNSRGPSYAWTVPHASTLEVGMIYQV 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5021405 5026833 + Sed0001793.1 Sed06g0572 717115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0572 773 Pfam K+ potassium transporter integral membrane domain 23 518 IPR053951 -
Sed06g0572 773 Pfam K+ potassium transporter C-terminal domain 532 772 IPR053952 -
Sed06g0572 773 NCBIfam potassium uptake protein 23 773 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Sed06g0572 773 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 14 773 IPR003855 GO:0006813(PANTHER)|GO:0015079(PANTHER)|GO:0015079(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2696 Sed-Chr3:43271128 Sed06g0572 Sed-Chr6:5021405 0.00E+00 dispersed
Sed04g2949 Sed-Chr4:40991641 Sed06g0572 Sed-Chr6:5021405 1.30E-285 dispersed
Sed04g2950 Sed-Chr4:40991641 Sed06g0572 Sed-Chr6:5021405 2.00E-223 dispersed
Sed06g0390 Sed-Chr6:3448587 Sed06g0572 Sed-Chr6:5021405 5.40E-255 dispersed
Sed06g0572 Sed-Chr6:5021405 Sed06g1626 Sed-Chr6:41035090 0.00E+00 dispersed
Sed06g0572 Sed-Chr6:5021405 Sed06g0573 Sed-Chr6:5021405 0.00E+00 tandem
Sed11g1933 Sed-Chr11:33739172 Sed06g0572 Sed-Chr6:5021405 0.00E+00 wgd
Sed06g0572 Sed-Chr6:5021405 Sed06g1625 Sed-Chr6:41035090 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0572 K03549 - csv:101211664 1439.86