Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0576 ATGCGCAGGCTAAAGTTCGTAAGACGGCTGAGAAATTGCTTCTCAATCATGAAGCATTATTTCTCATCAATATGGTGCCTTTTGACGTTGATTCATATGTTGAAAACCAGTCCCTATTGGGACACATATGAAATGAACATCCTGAATCAAGAATCCAATCATCAAATTTTAATTTGTCATCAGAAGCAACTAGGAGATCACCATCACTATCAACATTTTCAACAACACCAGCCTGACCGGAGCTTTCAGCTCAAGGCAATGAGGTTGAGAGAACTGGCTGAGGATATTAAGAACCAGAAACAGCAGAGGAAAGATATACCAAAAAAGAAGACCTTACCGAACCATAATGAAATTGTGGAGGGTACTTCTACTTCAAAAAGGAGCAAAAGCATCCCAAAAAGCCGCAATCTTGAAAATCTAAACGGAATGTTGGCAGCATCAGTTACCGATGGGGAGAATGTATTTTTGTCAAGCAGCGGTTCCTCTTTTGCTGGTGCCACTCTTACTAAAGAGGACAGTGGTGAACAGTCAACTCTGAACCAGAAGTACAAGAATGACTCAAAGGGCAAGAAGATTTTGTCGGATGAAACTCATCTAGTGGAGAGTGATTCAGAAAGGATGGAAGTTGCCTCAAGAAATGCCCATCAGCAAAAATTAGATGAGATGTTGGCAGCATCCATTGCAGCAGAGGAAGCCAGAAGTTTTGATGAAGATGCATCAGTATCTGCTGCAGCGGTGGATGGTGAAGATACAGATGATGAAGATGAAGAGATGATTTTGCCTGAAATGCAAGGTGTAGTTGATCCTTCTGTATTAGCTTCTTTGCCACCATCAATTCAACTCGATCTTCTTGTTCAGATGAGAGAGAGATTAATGGCTGAAAACAGACAGAAATACCAAAGGGTCAAGAAGGACCCTGCAAAGTTTTCTGAGCTACAAATACAGGCTTATCTTAAAACTGTTGCTTTTCGCCGGGATATTGATCAAGTGCAGAAGGCTGCCTCTGGTAGAGGGGTTGGTGGTGTACAGACATCAAGAATTGCCTCTGAAGCAAACAGGGAATTTATTTTTTCATCATCTTTCACGGGTGATAAACGGGAACTTGCGTCTACTAGAGCTGAGAATGGAGACAAAGACCTACAGGCACCTACAGTTCAACAACCTTTAAGTTTCCTAAATAATACAGAAATTCCTAGTACATCCAATGCTCTGGCTCGATCAACCTCTGATAAGTCGGGGGGTTTTGAGGATACTATTGAGACATTTTTAGATGAGAATGGACGTGTTCGAGTTAGCAGGGTGAGGGCCATGGGAATGCACATGACTCGTGATTTAGAAAGAAACTTGGATTTGATGAAAGAGATTGAAAAGAATACCACTGCAAAAAAGGCTGCAAATCCTGAACACATGCAAAGTATTGAAATATGTAATCCAGAAAGCTTTTCTTTTCAAAGCCAAGTTTTAGATGTTTCAGATGAAGGTATCAATGAATCCATTAATAAGTCGAATCAGAGGGCTTCAGAGTCCATGCTAAATGATGACACTTCCATAGAAATATTGTTGGAAGATGAGGCTGGGAAGTCTTTTGATGGTGATGATCTATTTACTCGTTTAGCCGCTGAAAATCCTGTTCAAATGGCTTCTTTTGACATCTCGCCCCAAAAGCTGTCTCTTGATGGTCCTGCATGTTCTAGTCGGAAGGAAGCACATGTGGGTGACCATTCCTTCAAGGAAGGAACTGATAGTGATGAGAGTGAAGTCGACTGGGAGGATGGTGTTTGTGATCATGTAAACCCCGTTTCTTTTGAAGCCCAATCAGGAAAGTCAGTTTCCAAAGGTTCTTTGGAGGAAGAGGCTGATTTGCAGGAGGCACTAAGAAGAAGTCTAGAGAACGTAGGAGACGGAAAATATGGCCATATATCTTCTGAACATCAGCAATCACAACCAGTAATTGTTAGAAAAATGGCTGAACAGTTTACAAGTGTCGAAAATGAGAATTTGATTGGACTTGTAAAGGTGAATAGTGTTGATGGAAAGAATTTTTCAAATTCCAATGATACTATCGAGGCAAAGGGAATGACTAAGAGTTCTTCTCAAGAAAAGCAATGTTCAGAACCTATTGTGTTGTTAGATAGCACAATTTCCGAACAGTTGGATGCTTCTTATGAGGATGCTACATTTTCTCTTAAAGAGTCTAATGAAAACAGTGATACTCTTAAGTCCTTATCTAGGGATTCACCTGGTGCAATTCAGGTTGGGGATAGGCTAAATCATTATGCGATTGATCCTCCTTGTCATATGGTTGAGATGGAAGGTAAAACTCCTGATGTTAATTCCTTACCAAACGCTTCTACCTGTGAAAATCATCACAAGCAGAATCCTGTTGACCAGTATGGCAGTGACCTTTTGGTAGAGGAAGAGGATGCAAAAAAGCCTGCAGTTGAAATATTCAATGCAGAGACTGAGGTTAAAGAGGATGAGTTGACAAGTAGAATTTCAATTCTGGAGCAAGAACGTCTGAATCTTGGAGATGAGCAGAAAAGACTTGAGCGTAATGCTGAATCTGTCAGCAGTGAAATGTTTGCAGAATGTCAGGAATTACTGCAAATGTTTGGCTTACCATATGTTATTGCTCCTATGGAAGCGGAAGCTCAATGTGCTTATATGGAACTTGCAAACCTTGTTGACGGAGTGGTTACTGATGACTCTGATGTTTTCCTGTTTGGGGCAAGAAGTGTTTACAAGAACATATTTGATGACCGTAAATATGTTGAGACATATTTTATGAAGGACGTTGAAAATGAGCTTGGTCTAAACCGAGACAAGTTAATTCACATGGCTCTTCTGCTTGGAAGTGATTATACTGAAGGCATCAGTGGGATTGGCATTGTTAATGCTGTTGAAGTTATGAATGCATTTCCGGAGGAAGATGGACTCCGTAAATTCAAAGAGTGGGTTGAATCGCCGGATCCAAGCATCTTAGGGACACTTGGTGCAAAAACAGGGTTAAGTGCACGTAAAAGAGGATCAAATAGCAGTGTAAGGAATGGTTCTGCATCTGAAGAGAACATTGATAAAGATCTGAAGGAAGACAGAGATATTAAACAGAGCTTCATGGATAAGCATAGAAATGTTAGCAAGAACTGGCACATCCCTTCTGAATTTCCTAGTGAAACAGTCATTTCTGCTTACATCTCCCCACAAGTGGACAAGTCAGCAGAACCTTTCTCCTGGGGGAAGCCAGACCATTTATTCCTTCGCAGATTATGCTGGGAAAAATTCAGTTGGGATAACTCGAAGGCAGATGAATTGCTTTTGCCAGTCTTGAAAGAGTACGGAAAACATGAGACTCAACTTCGATTGGAGGCGTTTTACACTTTCAATGATAGATTTGCTAAAATCCGCAGTAAGAGAATAAAAAAAGCTGTTAAAAGTATATCCGGGAGCAAGTCTGCCATGTTAATGGATGACACTGTGCGGGATATTTCTGAAAACAGTAAAAAAGATCTTTCTGTTGAGCCTCTGGAGACTATGCCTGCGAAATCTTCATCAGAAATACAAGGTGCTTGTTCAAATGAAGATAAAGTAGAAAATCGAGTCCGAAAACCTTCGAGGAAAAGGCAGCTAGATTTAGAACAATCGCAACCTGCTAAGGATCGAAAACTAACAATGAAGGAAAAAGGAAAAAGTAGAAATGTGGAATCACATTCCGAAAGAGGTAGAGGTAGGGGTAGAGGGAAAGGGAGGGGGAGGGGGAGGGGGAGAGGTCGGTCGGCATCGAAAGGAAAGACTCCTATTACTGAATTGACTGAAACCAGCTCCAGTGATGATGAAGGTGAACTCAGTGGTCAGGAATTTGAGTTGGAGAATTTGCAGGAGGCTCAAGAAAGGAGAAAATCATTACGAATCCGAAAACCTGCAAGTTATACTATGGATGACGCAGATCAAGATCAACCATCAAATCACAGTAGGGATAGATTCTCCTATGATGAAACCAAAGAAGACATTATGGTCCGGGATCAGTACGCACATCCTGAAACTATAATGAGCCAATCCGAAAAAACAGATTGCGATTTCGGAACTTCTAAGAGATCTCCACAAAAGGATTTTCTTGAGACTGGAAGTGGTTTCTGTCTAGAAGAAAATGAAATGAGCCAACAAGAAATTTTCCAGAACAAAGATCCATCCTTGGAGGTTAACAACAGTGAAGACTACCTCACAATGGGAGGTGGCTTTTGCTTAGATGACGATAATGAATGCGCCGACCCGGTTGCACATCTCGACCAAGCAACCATATCAGAAGTCCCCAAAGATAGCTCTGAAGATGATCCCGGTCAATCAACCTTCCATCCGGATAAAAACATAGGTGGAGACCAGAACATGGAAGATATAGATGCACGTGTAGACTCTCCGTTCGATGCGGGCGAGGTGAATCCGATTAGTAATCCAAACTCTACCCTGGTTGGTGAGGGTGTGCAAGAGGAACCCAAGGATCATTCTCAAAGGGCATTTGGAGGAGCTCTAAGTGCCATGCCTAATTTGAGAAGAAAGAGGAGAAAGTTCTGA 4566 41.48 MRRLKFVRRLRNCFSIMKHYFSSIWCLLTLIHMLKTSPYWDTYEMNILNQESNHQILICHQKQLGDHHHYQHFQQHQPDRSFQLKAMRLRELAEDIKNQKQQRKDIPKKKTLPNHNEIVEGTSTSKRSKSIPKSRNLENLNGMLAASVTDGENVFLSSSGSSFAGATLTKEDSGEQSTLNQKYKNDSKGKKILSDETHLVESDSERMEVASRNAHQQKLDEMLAASIAAEEARSFDEDASVSAAAVDGEDTDDEDEEMILPEMQGVVDPSVLASLPPSIQLDLLVQMRERLMAENRQKYQRVKKDPAKFSELQIQAYLKTVAFRRDIDQVQKAASGRGVGGVQTSRIASEANREFIFSSSFTGDKRELASTRAENGDKDLQAPTVQQPLSFLNNTEIPSTSNALARSTSDKSGGFEDTIETFLDENGRVRVSRVRAMGMHMTRDLERNLDLMKEIEKNTTAKKAANPEHMQSIEICNPESFSFQSQVLDVSDEGINESINKSNQRASESMLNDDTSIEILLEDEAGKSFDGDDLFTRLAAENPVQMASFDISPQKLSLDGPACSSRKEAHVGDHSFKEGTDSDESEVDWEDGVCDHVNPVSFEAQSGKSVSKGSLEEEADLQEALRRSLENVGDGKYGHISSEHQQSQPVIVRKMAEQFTSVENENLIGLVKVNSVDGKNFSNSNDTIEAKGMTKSSSQEKQCSEPIVLLDSTISEQLDASYEDATFSLKESNENSDTLKSLSRDSPGAIQVGDRLNHYAIDPPCHMVEMEGKTPDVNSLPNASTCENHHKQNPVDQYGSDLLVEEEDAKKPAVEIFNAETEVKEDELTSRISILEQERLNLGDEQKRLERNAESVSSEMFAECQELLQMFGLPYVIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDVENELGLNRDKLIHMALLLGSDYTEGISGIGIVNAVEVMNAFPEEDGLRKFKEWVESPDPSILGTLGAKTGLSARKRGSNSSVRNGSASEENIDKDLKEDRDIKQSFMDKHRNVSKNWHIPSEFPSETVISAYISPQVDKSAEPFSWGKPDHLFLRRLCWEKFSWDNSKADELLLPVLKEYGKHETQLRLEAFYTFNDRFAKIRSKRIKKAVKSISGSKSAMLMDDTVRDISENSKKDLSVEPLETMPAKSSSEIQGACSNEDKVENRVRKPSRKRQLDLEQSQPAKDRKLTMKEKGKSRNVESHSERGRGRGRGKGRGRGRGRGRSASKGKTPITELTETSSSDDEGELSGQEFELENLQEAQERRKSLRIRKPASYTMDDADQDQPSNHSRDRFSYDETKEDIMVRDQYAHPETIMSQSEKTDCDFGTSKRSPQKDFLETGSGFCLEENEMSQQEIFQNKDPSLEVNNSEDYLTMGGGFCLDDDNECADPVAHLDQATISEVPKDSSEDDPGQSTFHPDKNIGGDQNMEDIDARVDSPFDAGEVNPISNPNSTLVGEGVQEEPKDHSQRAFGGALSAMPNLRRKRRKF 1521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5034508 5048399 + Sed0016811.1 Sed06g0576 717119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0576 1521 ProSitePatterns XPG protein signature 2. 872 886 IPR019974 GO:0016788(InterPro)
Sed06g0576 1521 MobiDBLite consensus disorder prediction 1290 1341 - -
Sed06g0576 1521 MobiDBLite consensus disorder prediction 566 582 - -
Sed06g0576 1521 SMART HhH_4 940 973 IPR008918 GO:0003677(InterPro)|GO:0003824(InterPro)
Sed06g0576 1521 MobiDBLite consensus disorder prediction 1242 1258 - -
Sed06g0576 1521 MobiDBLite consensus disorder prediction 1177 1191 - -
Sed06g0576 1521 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 938 1133 IPR036279 -
Sed06g0576 1521 Coils Coil 612 632 - -
Sed06g0576 1521 MobiDBLite consensus disorder prediction 1427 1521 - -
Sed06g0576 1521 Gene3D - 807 937 - -
Sed06g0576 1521 MobiDBLite consensus disorder prediction 1192 1241 - -
Sed06g0576 1521 MobiDBLite consensus disorder prediction 165 183 - -
Sed06g0576 1521 FunFam DNA repair protein UVH3 938 995 - -
Sed06g0576 1521 MobiDBLite consensus disorder prediction 1165 1368 - -
Sed06g0576 1521 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 83 1519 - GO:0003697(PANTHER)|GO:0004520(PANTHER)|GO:0005634(PANTHER)
Sed06g0576 1521 MobiDBLite consensus disorder prediction 560 588 - -
Sed06g0576 1521 Gene3D - 938 993 - -
Sed06g0576 1521 SMART xpgineu 869 938 IPR006086 GO:0004518(InterPro)
Sed06g0576 1521 Pfam XPG I-region 872 953 IPR006086 GO:0004518(InterPro)
Sed06g0576 1521 MobiDBLite consensus disorder prediction 1003 1026 - -
Sed06g0576 1521 CDD PIN_XPG_RAD2 855 936 - -
Sed06g0576 1521 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 889 909 IPR006084 -
Sed06g0576 1521 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 943 958 IPR006084 -
Sed06g0576 1521 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 868 885 IPR006084 -
Sed06g0576 1521 MobiDBLite consensus disorder prediction 96 133 - -
Sed06g0576 1521 MobiDBLite consensus disorder prediction 165 186 - -
Sed06g0576 1521 Coils Coil 1284 1304 - -
Sed06g0576 1521 MobiDBLite consensus disorder prediction 1005 1019 - -
Sed06g0576 1521 Coils Coil 818 852 - -
Sed06g0576 1521 SUPERFAMILY PIN domain-like 836 953 IPR029060 -
Sed06g0576 1521 MobiDBLite consensus disorder prediction 1456 1470 - -
Sed06g0576 1521 MobiDBLite consensus disorder prediction 116 133 - -
Sed06g0576 1521 CDD H3TH_XPG 941 1071 - -
Sed06g0576 1521 FunFam DNA repair protein UVH3 818 937 - -
Sed06g0576 1521 MobiDBLite consensus disorder prediction 96 115 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0576 K10846 - - csv:101216163 1941.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0576 Sed-Chr6:5034508 Sed06g0578 Sed-Chr6:5034508 0.00E+00 dispersed
Sed06g0576 Sed-Chr6:5034508 Sed06g0577 Sed-Chr6:5034508 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g654 . . Bda05g00064 . Bpe03g00291 . Bma10g01219 . . Cmo18g01265 . . . . Sed06g0576 . . Bhi01g01332 Tan01g0264 Cmetu11g0868 . Hepe07g0167 Mch10g0164 . . . . . . . . . . Cone14ag0094 Cone15ag0100 Lsi05g01238 . . Cme06g00987 Blo07g00415 . . . . . . . . . . . Cma18g01242 . Car18g01147 Cpe09g00095 . . . . . . . . Cla05g00870 Cam05g0959 Cec05g0963 Cco05g0963 Clacu05g0945 Cmu05g0902 Cre05g0986 . Csa03g01701 Chy06g00937 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008516 1 3 0 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34