Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0579 ATGGAGCGGAGCTCTACGATGTACAAGGAATTCGCTCCACTGATCGGAATGATCGCCGGCGAGTGCGCCATCGTCGGCTCCAACACCGTCTACAAAGCCATCTCCGGCCACCAAATCAGCTTCTACGTCTTCACTCTCTACACCTGCCTCGCCGCCGCTCTCGTTCTCCTCCCCTTCGCCCTCATCTTCCGCAGATCTGGCGTTTTTCCGTCGGAGAAGTTGTCGTTCTTCCTCCGGTTGATCTTCCTGTCCGCCATGGGCGTTGGATGTCAGCTGTTTTCGTACAAAGGATTGGAGTACAGTTCGCCGACGCTGGCTTCCGCCATTAGTAACCTAATTCCTGCTCTCACTTTCATCTTGGCCGTTCTCTTTCGGATGGAGAAACTTGCTTTGAAAAGCTCAAGCAGCATAGCCAAAATCGTTGGATCAGCAGTGTCCATAGCAGGTGCACTAGTGGTGGTTCTGTATAAAGGTCCAGTCATTCTATCAAGGCCATTTTCTGGACCAACAAGGTTGAATCTTTCTCCTCATCCTTTGGCCTCTTCCCAATCAAGTTGGGTTTTGGGTGGCCTCTGCTTTTTTGCTCAGTACCTTCTCAACTCTTTCTGGTACATTGTTCTGACCCAAATGTTGACCATGTATCCAGATGAGCTAGTTGTGGTGTGCTTGTACTATGTTTTCGAGGTCATCATAGCTGCACCAATCTGCCTATTAGCAGAAGGAAACTTGAGTGCATGGAAACTAAAAAACGGTCTGGAATTCGCTGCGGTTTTGAACTCGGGATGTGTGGGTCAATCCTTTGTCTCTGCAATCCACACATGGGGTGTACATGTGAAAGGGCCTGTTTATGTATCAAGTTTCAGGCCACTCTCAATTGCCATTGCTGCTGCTTCTGGTGTCATTTTCCTTGGGGATGATCTCTATCTTGGAAGTATAATTGGAGCAACAATAATAGCAAGTGGTTTTTACTCTATTATGTGGGGGAAAATAAAAGAAGACGAGTTGCTGGGCAAAGATGGCTTTTCAAGCTTGGAGTCTTCATCCAAAGATAAAATTCCATTGTTGAAAGGTTCTAAAGTTCAAAATGACTAA 1092 46.98 MERSSTMYKEFAPLIGMIAGECAIVGSNTVYKAISGHQISFYVFTLYTCLAAALVLLPFALIFRRSGVFPSEKLSFFLRLIFLSAMGVGCQLFSYKGLEYSSPTLASAISNLIPALTFILAVLFRMEKLALKSSSSIAKIVGSAVSIAGALVVVLYKGPVILSRPFSGPTRLNLSPHPLASSQSSWVLGGLCFFAQYLLNSFWYIVLTQMLTMYPDELVVVCLYYVFEVIIAAPICLLAEGNLSAWKLKNGLEFAAVLNSGCVGQSFVSAIHTWGVHVKGPVYVSSFRPLSIAIAAASGVIFLGDDLYLGSIIGATIIASGFYSIMWGKIKEDELLGKDGFSSLESSSKDKIPLLKGSKVQND 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5049782 5059284 + Sed0005927.1 Sed06g0579 717122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0579 363 SUPERFAMILY Multidrug resistance efflux transporter EmrE 237 330 - -
Sed06g0579 363 PANTHER WAT1-RELATED PROTEIN 16 342 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed06g0579 363 Pfam EamA-like transporter family 21 153 IPR000620 GO:0016020(InterPro)
Sed06g0579 363 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0579 Sed-Chr6:5049782 Sed11g1945 Sed-Chr11:33783997 2.10E-68 dispersed
Sed02g0070 Sed-Chr2:8622739 Sed06g0579 Sed-Chr6:5049782 1.20E-107 transposed
Sed11g1944 Sed-Chr11:33783997 Sed06g0579 Sed-Chr6:5049782 1.50E-74 wgd
Sed03g0149 Sed-Chr3:930140 Sed06g0579 Sed-Chr6:5049782 1.20E-49 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0579 - - - 0.0