Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0593 ATGTTCGATTGTAGTGGCGGATACAAGTCGCAGTACATCGGCGGTCAAAAAGAGAAATTCGTAAGGTTGGATGAGTTGGATTCGAATCTGTCAATGTCCTCTGAAACAAGCAGCATCATGAAGAAATGTCGATTCAACCTAGAAGGTCTTCCACTGCCGTTCATAAGCCGATCGAACCCTAGAAACGCCTCGAAATCGTTCCGGAAAGGAGTGCAAAGAAGCTCCGACGGGATCATAACCCTAGGCCGCTCGCTCCGCACCGGCGTATCCAGAGTCATCTTCCCTGAGGATCTGAAGGTTTCCGATCAGAAAATCTTCGATCCGCAGGACAAATCGCTCCTGTTCTGGAACAAACTGTTCGTTCTCAGCTGTATCCTCGCCGTCTCCATCGATCCGTTGTTCTTCTACCTCCCTGTGTTCAACCACGCCTCTTACTGCTTAGGAATGGACACTCAGCTCGCCGTCACCACCACCACCGTTCGCACCGCCGTCGATCTGTTCTACTTGATTCGCATGGCGTTCCAGTTCCGGACGGCGTACATTGCGCCATCGTCGCGGGTGTTCGGTCGCGGCGAGCTTGTCATCGATCCGGCGGATATCGCCAAGCGGTATCTTCATCGCTACTTCATTGCTGATTTTCTCTCTGTTCTTCCTCTTCCTCAGGTGGTGGTGTGGAGGTTTCTCCACAGGTCAAAAGGTTCAGAAGTGTTGGCAACAAAACAAGCATTGTTAAACATAGTGTTTCTTCAGTACATTCCCAGATTTACAAGGTTTATACCTTTGAACATAGAGCTCAAGAAGACAGCAGGAGTTTTTGCTGAAAGTGCCTGGGCTGGTGCTGCTTACTATCTCCTCTTGTATATGCTTGCTAGTCATATAGCGGGAGCGTTCTGGTACTTGCTGGCGGTGGAGAGGAACGATGCATGTTGGAGACAAGCATGCAGAAGCACAGGAAAGTGCAACATAAACTATTTGTACTGTGGAAATAAGCACATGGCAGGGTATAAGGATTGGAGAGTTATAAGTGCTGGTATTCTAAAAAAGAAATGCACTGCTATTGGAGACAATTTGCCTTTCAACTATGGCATTTACACTCAGGCCATTTCCTCTCGCATTGTTCAGTCCAGGACTTTCTTCTCCAAGTTCTGCTACTGCTTGTGGTGGGGCTTGCAAAATTTGAGTACACTTGGTCAGGGGCTGCTCACCAGTACCTATCCTGGGGAGGTTATCTTTTCTATACTAATTGCAATTTCTGGGCTCCTCCTTTTTGCACTCTTGATTGGAAACATGCAAACGTACCTTCAATCTCTAACAGTCCGGCTCGAAGAGATGCGCATCAAGAGGAGAGACTCGGAGCAGTGGATGCACCATCGGCTACTTCCACCGGACTTGAGAGAAAAAGTTAGGCGCTACGACCAGTACAAATGGCTCGAAACCAGAGGGGTGGATGAAGAGAGCTTGGTTCAAAGTCTGCCTAAAGATCTTAGGAGAGACATTAAACGCCATCTCTGTCTCAATTTGGTTAGAAGGGTGCCATTATTCGCAAACATGGACGAGCGACTACTAGACGCAATATGCGAGAGGCTAAAACCAACGCTATACACAGAAAACACATACATAGTCCGAGAAGGCGACCCAGTAGAAGAAATGCTCTTCATAATCCGCGGCCGCCTCGAAAGCGTCACAACCGACGGTGGCCGCAGCGGCTTCTTCAACCGCGGCGTCTTGAAAGAAGGCGACTTCTGCGGTGAGGAGCTTCTAACATGGGCATTGGACCCAAAATCCGGCTCCAACCTCCCGTCCTCGACCCGAACCGTCCATGCGATCACCGAGGTCGAAGCATTCGCATTAGAAGCCGAGGAGCTCAAGTTCGTGGCGACCCAGTTTCGGCGTCTCCACAGTCGCCAAGTGCAGCACACGTTCAGATTCTACTCGCAGCAGTGGCGCACTTGGGCTTCTATTTTTATTCAGGCTGCATGGCGGCGGTACGTGAAGCGGAAGTTGGCGGAGCTGCGGCGGAAGGAGGAGGAGGATGCAGCGGCGTATAGCTCGTCAAGACTCGGAGCAACCATTTTGGCGTCGAGGTTTGCGGCTGCGCTTAGAGGACAACGGAACAGGAATATTAGTGCTAAGAGCTTGATTAACTTGCAGAAGCCTGCTGAGCCTGATTTTTCTGTCTATAAAGGAGACTAA 2193 49.98 MFDCSGGYKSQYIGGQKEKFVRLDELDSNLSMSSETSSIMKKCRFNLEGLPLPFISRSNPRNASKSFRKGVQRSSDGIITLGRSLRTGVSRVIFPEDLKVSDQKIFDPQDKSLLFWNKLFVLSCILAVSIDPLFFYLPVFNHASYCLGMDTQLAVTTTTVRTAVDLFYLIRMAFQFRTAYIAPSSRVFGRGELVIDPADIAKRYLHRYFIADFLSVLPLPQVVVWRFLHRSKGSEVLATKQALLNIVFLQYIPRFTRFIPLNIELKKTAGVFAESAWAGAAYYLLLYMLASHIAGAFWYLLAVERNDACWRQACRSTGKCNINYLYCGNKHMAGYKDWRVISAGILKKKCTAIGDNLPFNYGIYTQAISSRIVQSRTFFSKFCYCLWWGLQNLSTLGQGLLTSTYPGEVIFSILIAISGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRLLPPDLREKVRRYDQYKWLETRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPTLYTENTYIVREGDPVEEMLFIIRGRLESVTTDGGRSGFFNRGVLKEGDFCGEELLTWALDPKSGSNLPSSTRTVHAITEVEAFALEAEELKFVATQFRRLHSRQVQHTFRFYSQQWRTWASIFIQAAWRRYVKRKLAELRRKEEEDAAAYSSSRLGATILASRFAAALRGQRNRNISAKSLINLQKPAEPDFSVYKGD 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5238145 5245045 + Sed0025271.1 Sed06g0593 717136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0593 730 SUPERFAMILY cAMP-binding domain-like 443 633 IPR018490 -
Sed06g0593 730 ProSiteProfiles cAMP/cGMP binding motif profile. 513 643 IPR000595 -
Sed06g0593 730 Pfam Ion transport protein 115 440 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g0593 730 Gene3D Helix hairpin bin 440 504 - -
Sed06g0593 730 Gene3D Jelly Rolls 511 631 IPR014710 -
Sed06g0593 730 FunFam Cyclic nucleotide-gated ion channel 1 511 629 - -
Sed06g0593 730 Gene3D - 119 438 - -
Sed06g0593 730 ProSiteProfiles IQ motif profile. 649 678 - -
Sed06g0593 730 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 90 702 - -
Sed06g0593 730 Pfam Cyclic nucleotide-binding domain 534 623 IPR000595 -
Sed06g0593 730 SMART cnmp_10 513 644 IPR000595 -
Sed06g0593 730 CDD CAP_ED 513 644 IPR000595 -
Sed06g0593 730 FunFam Cyclic nucleotide-gated ion channel 1 440 504 - -
Sed06g0593 730 SUPERFAMILY Voltage-gated potassium channels 108 435 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2909 Sed-Chr3:46224097 Sed06g0593 Sed-Chr6:5238145 1.70E-290 dispersed
Sed06g0593 Sed-Chr6:5238145 Sed13g2104 Sed-Chr13:25724430 1.60E-200 dispersed
Sed06g0593 Sed-Chr6:5238145 Sed11g0465 Sed-Chr11:4316016 3.20E-302 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0593 K05391 - csv:101221166 1311.98