Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g0605 | ATGGCTGGTTGTACAATCAAGGTTTTGATGGTGCTGGTTTCAATGGCTGCTTTGATGCTAACCTCTAGAGCTGGCATTGCTGAATTTGATGACTATTTGAGGCTTATGGCTGATGAAGCCAAACAAGCTGCTCTTGAAGATTTCCATCCTGACCCCATGAATGTCACTTACCATTTCAATCATCAAGTTCATTTAGCTTTGGAGGGAAGCAACAGTAGTAGAAGGACGTTGGCGAAATACAAAGGGCCATGCTTGGCGACAAACCCTATCGACCGTTGCTGGCGTTGCGACCGAAACTGGGCGAACAACCGCAAGAAGCTTGCCTCTTGCGTTCTCGGTTTCGGGCGTAAAACCACGGGCGGACTAAAAGGGAGGTACTACATTGTGACGGATCCATCCGACAACGACGTCCAAAACCCTAGACCTGGAACCCTCCGATACGGAGCAATCCAAAAACGACCGCTATGGATCATATTTGGACGTAGCATGATCATCAAGCTATCTAAGGAGCTGTTGATAACAAGCCACAAGACCATTGATGCACGTGGGAAGAACGTGCACATAGCCTATGGTGCCGGTCTAAGCATTCAATTTGCCCGAAATGTTATCATCCACGGTCTCCACATCCACCACATCAAGTCAGCCAGCGGGGGTATGATCCGAGACACGTACAACCATGTCGGGATTCGAACGGTGAGTGACGGTGACGGTGTCTCGATCTTTGGATCGTCAAACATCTGGCTAGATCACCTGTCGATGTCAAACTGCCAGGACGGGCTGATCGACGCAATCCAAGGCTCGACGGGAATCACAATCTCGAACTCTCATTTCACGCATCATAACGATGTGATGTTGTTTGGTGCAAGTGATTCATACCAAGGGGACTCAATCATGCAAGTGACTGTGGCATTCAACCATTTTGGAAAAGGATTGATACAAAGAATGCCAAGGTGTAGATGGGGTTTCTTCCATGTTGTCAACAATGATTACACTCATTGGCTCATGTATGCCATTGGGGGAAGCCAACATCCCACCATTATAAGCCAAGGAAACAGGTTCATAGCACCACCCAACCCAGCTGCAAGACAGATCACAAACAGAAACTATGCACCCGAGAGCGTGTGGAGAACATGGACGTGGAGATCCGAGGGTGATCTCATGATGAACGGAGCGTATTTCGTGCAGTCGGGAAACCAGAGCAGACGAAGGCCATACAGCCGGTTCGACATGGTCAAGGCTAAGCCGGGCACTTTTGTTAGAAGGCTCACACGCTTCGCTGGCTCGCTCAACTGTTATGTTGGACGCCCATGCTAA | 1314 | 49.09 | MAGCTIKVLMVLVSMAALMLTSRAGIAEFDDYLRLMADEAKQAALEDFHPDPMNVTYHFNHQVHLALEGSNSSRRTLAKYKGPCLATNPIDRCWRCDRNWANNRKKLASCVLGFGRKTTGGLKGRYYIVTDPSDNDVQNPRPGTLRYGAIQKRPLWIIFGRSMIIKLSKELLITSHKTIDARGKNVHIAYGAGLSIQFARNVIIHGLHIHHIKSASGGMIRDTYNHVGIRTVSDGDGVSIFGSSNIWLDHLSMSNCQDGLIDAIQGSTGITISNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLIQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYAPESVWRTWTWRSEGDLMMNGAYFVQSGNQSRRRPYSRFDMVKAKPGTFVRRLTRFAGSLNCYVGRPC | 437 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 5374957 | 5376356 | + | Sed0025434.1 | Sed06g0605 | 717148 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g0605 | 437 | Pfam | Pectate lyase | 194 | 353 | IPR002022 | - | |
Sed06g0605 | 437 | PRINTS | Pollen allergen Amb family signature | 378 | 402 | IPR018082 | - | |
Sed06g0605 | 437 | PRINTS | Pollen allergen Amb family signature | 408 | 431 | IPR018082 | - | |
Sed06g0605 | 437 | PRINTS | Pollen allergen Amb family signature | 170 | 186 | IPR018082 | - | |
Sed06g0605 | 437 | PRINTS | Pollen allergen Amb family signature | 110 | 127 | IPR018082 | - | |
Sed06g0605 | 437 | PRINTS | Pollen allergen Amb family signature | 134 | 159 | IPR018082 | - | |
Sed06g0605 | 437 | PRINTS | Pollen allergen Amb family signature | 336 | 355 | IPR018082 | - | |
Sed06g0605 | 437 | PRINTS | Pollen allergen Amb family signature | 234 | 255 | IPR018082 | - | |
Sed06g0605 | 437 | PRINTS | Pollen allergen Amb family signature | 314 | 333 | IPR018082 | - | |
Sed06g0605 | 437 | Gene3D | - | 87 | 430 | IPR012334 | - | |
Sed06g0605 | 437 | Pfam | Pectate lyase, N terminus | 26 | 77 | IPR007524 | GO:0030570(InterPro) | |
Sed06g0605 | 437 | SUPERFAMILY | Pectin lyase-like | 88 | 427 | IPR011050 | - | |
Sed06g0605 | 437 | SMART | amb_all | 162 | 359 | IPR002022 | - | |
Sed06g0605 | 437 | PANTHER | PECTATE LYASE 18-RELATED | 19 | 434 | IPR045032 | GO:0030570(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g0605 | Sed-Chr6:5374957 | Sed06g1558 | Sed-Chr6:40394637 | 1.70E-181 | dispersed | |
Sed06g0605 | Sed-Chr6:5374957 | Sed08g1352 | Sed-Chr8:28116850 | 2.00E-230 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g0605 | K01728 | - | csv:101202789 | 805.053 |