Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0605 ATGGCTGGTTGTACAATCAAGGTTTTGATGGTGCTGGTTTCAATGGCTGCTTTGATGCTAACCTCTAGAGCTGGCATTGCTGAATTTGATGACTATTTGAGGCTTATGGCTGATGAAGCCAAACAAGCTGCTCTTGAAGATTTCCATCCTGACCCCATGAATGTCACTTACCATTTCAATCATCAAGTTCATTTAGCTTTGGAGGGAAGCAACAGTAGTAGAAGGACGTTGGCGAAATACAAAGGGCCATGCTTGGCGACAAACCCTATCGACCGTTGCTGGCGTTGCGACCGAAACTGGGCGAACAACCGCAAGAAGCTTGCCTCTTGCGTTCTCGGTTTCGGGCGTAAAACCACGGGCGGACTAAAAGGGAGGTACTACATTGTGACGGATCCATCCGACAACGACGTCCAAAACCCTAGACCTGGAACCCTCCGATACGGAGCAATCCAAAAACGACCGCTATGGATCATATTTGGACGTAGCATGATCATCAAGCTATCTAAGGAGCTGTTGATAACAAGCCACAAGACCATTGATGCACGTGGGAAGAACGTGCACATAGCCTATGGTGCCGGTCTAAGCATTCAATTTGCCCGAAATGTTATCATCCACGGTCTCCACATCCACCACATCAAGTCAGCCAGCGGGGGTATGATCCGAGACACGTACAACCATGTCGGGATTCGAACGGTGAGTGACGGTGACGGTGTCTCGATCTTTGGATCGTCAAACATCTGGCTAGATCACCTGTCGATGTCAAACTGCCAGGACGGGCTGATCGACGCAATCCAAGGCTCGACGGGAATCACAATCTCGAACTCTCATTTCACGCATCATAACGATGTGATGTTGTTTGGTGCAAGTGATTCATACCAAGGGGACTCAATCATGCAAGTGACTGTGGCATTCAACCATTTTGGAAAAGGATTGATACAAAGAATGCCAAGGTGTAGATGGGGTTTCTTCCATGTTGTCAACAATGATTACACTCATTGGCTCATGTATGCCATTGGGGGAAGCCAACATCCCACCATTATAAGCCAAGGAAACAGGTTCATAGCACCACCCAACCCAGCTGCAAGACAGATCACAAACAGAAACTATGCACCCGAGAGCGTGTGGAGAACATGGACGTGGAGATCCGAGGGTGATCTCATGATGAACGGAGCGTATTTCGTGCAGTCGGGAAACCAGAGCAGACGAAGGCCATACAGCCGGTTCGACATGGTCAAGGCTAAGCCGGGCACTTTTGTTAGAAGGCTCACACGCTTCGCTGGCTCGCTCAACTGTTATGTTGGACGCCCATGCTAA 1314 49.09 MAGCTIKVLMVLVSMAALMLTSRAGIAEFDDYLRLMADEAKQAALEDFHPDPMNVTYHFNHQVHLALEGSNSSRRTLAKYKGPCLATNPIDRCWRCDRNWANNRKKLASCVLGFGRKTTGGLKGRYYIVTDPSDNDVQNPRPGTLRYGAIQKRPLWIIFGRSMIIKLSKELLITSHKTIDARGKNVHIAYGAGLSIQFARNVIIHGLHIHHIKSASGGMIRDTYNHVGIRTVSDGDGVSIFGSSNIWLDHLSMSNCQDGLIDAIQGSTGITISNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLIQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYAPESVWRTWTWRSEGDLMMNGAYFVQSGNQSRRRPYSRFDMVKAKPGTFVRRLTRFAGSLNCYVGRPC 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5374957 5376356 + Sed0025434.1 Sed06g0605 717148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0605 437 Pfam Pectate lyase 194 353 IPR002022 -
Sed06g0605 437 PRINTS Pollen allergen Amb family signature 378 402 IPR018082 -
Sed06g0605 437 PRINTS Pollen allergen Amb family signature 408 431 IPR018082 -
Sed06g0605 437 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Sed06g0605 437 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Sed06g0605 437 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Sed06g0605 437 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Sed06g0605 437 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Sed06g0605 437 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Sed06g0605 437 Gene3D - 87 430 IPR012334 -
Sed06g0605 437 Pfam Pectate lyase, N terminus 26 77 IPR007524 GO:0030570(InterPro)
Sed06g0605 437 SUPERFAMILY Pectin lyase-like 88 427 IPR011050 -
Sed06g0605 437 SMART amb_all 162 359 IPR002022 -
Sed06g0605 437 PANTHER PECTATE LYASE 18-RELATED 19 434 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0605 Sed-Chr6:5374957 Sed06g1558 Sed-Chr6:40394637 1.70E-181 dispersed
Sed06g0605 Sed-Chr6:5374957 Sed08g1352 Sed-Chr8:28116850 2.00E-230 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0605 K01728 - csv:101202789 805.053