Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0607 ATGGAGCTCAAGAACGAGGAGAATCTAAGAACATGTTGGACACAAGGCAAAACACAAGCCATGAGACGTGTCAAGAGACGTCGAAGATCAGATCTCGCCACCACCACCGGCGCCACCGTCGTTGTTGATCAATCGAATAAGAAACCTTGTCCACAGACAGATCAAGCAGCTCCAACCAACACCACGAAGCGGAGCTCGAGATTTCGCGGCGTGAGCAGACATAGATGGACGGGTCGATACGAAGCTCATTTATGGGATAAGCTTTCATGGAATATGACACAAAAGAAGAAGGGAAAGCAAGGAGCTTATGATGAAGAACAATCAGCTGCAAGAGCATATGATTTAGCAGCACTCAAGTATTGGGGTGTAACAACCATCACTAATTTCCCAATAGCGGAATATGAGAAGGAGATTGAGATCATGGAAACAATGACAAAGGAAGAGTATTTGGCCTCTTTGAGAAGAAAGAGTAGTGGATTCTCAAGAGGTGTATCAAAATATAGAGGAGTTGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGAATAGGGAGAGTTTATGGGAACAAATACCTCTATCTTGGAACTTACAGCACTCAAGAGGAAGCTGCTCGGGCTTACGATATGGCCGCCATTGAATATCGAGGGATTAATGCAGTCACCAACTTCGACTGGAGCAATTACATGGCATGGCTGAAGCCTCCACCACCACCCATCCCTCTCATCGAAGCCAATATGACATCGGGCCCGAACAAGGAATTCCACAACTCCAACTCCATCCTAGCAGAAGATGCTTCCAACTTCAAAAACCATCACTTGGATATCGATTCCTTCCATTCCCTTCAAAAGCAAGAGCTTCTTGAAAGTTGCAGCGCCCCGCTGAATGGTTTTACCAGATCTTCTTCTTCATCGGCGCTCGACCTTCTTTTTCGATCTTCATTTTTCAAGAAATTGGTTGAGACCAACTCGAATGTATCTGTGGAAGAGGCCAATAATGGAGAAGATGTGAAGACTCAAGCGGAGCTCGACAGTGTCTTCGATGAGTTCGGAGACATCTTCTGTGATAGATTTACAGATGTACCATACGTTTGCAGCTCCAACAAAGAGCTGCAAGAAAGTGAGCTCCATTCGTTCTTAAATGGCACATTTCATCGCTTCAAAGCCTCCTGA 1170 45.47 MELKNEENLRTCWTQGKTQAMRRVKRRRRSDLATTTGATVVVDQSNKKPCPQTDQAAPTNTTKRSSRFRGVSRHRWTGRYEAHLWDKLSWNMTQKKKGKQGAYDEEQSAARAYDLAALKYWGVTTITNFPIAEYEKEIEIMETMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYSTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPPPPPIPLIEANMTSGPNKEFHNSNSILAEDASNFKNHHLDIDSFHSLQKQELLESCSAPLNGFTRSSSSSALDLLFRSSFFKKLVETNSNVSVEEANNGEDVKTQAELDSVFDEFGDIFCDRFTDVPYVCSSNKELQESELHSFLNGTFHRFKAS 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5404720 5407584 + Sed0025722.1 Sed06g0607 717150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0607 389 CDD AP2 66 132 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g0607 389 Pfam AP2 domain 165 216 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g0607 389 ProSiteProfiles AP2/ERF domain profile. 166 224 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g0607 389 ProSiteProfiles AP2/ERF domain profile. 67 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g0607 389 PRINTS Ethylene responsive element binding protein signature 206 226 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g0607 389 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g0607 389 MobiDBLite consensus disorder prediction 33 66 - -
Sed06g0607 389 SUPERFAMILY DNA-binding domain 66 131 IPR016177 GO:0003677(InterPro)
Sed06g0607 389 Gene3D AP2/ERF domain 165 225 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g0607 389 Gene3D AP2/ERF domain 66 132 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g0607 389 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 55 253 - -
Sed06g0607 389 SMART rav1_2 166 230 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g0607 389 SMART rav1_2 67 136 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g0607 389 FunFam AP2-like ethylene-responsive transcription factor 165 226 - -
Sed06g0607 389 SUPERFAMILY DNA-binding domain 165 226 IPR016177 GO:0003677(InterPro)
Sed06g0607 389 CDD AP2 165 226 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g0607 389 MobiDBLite consensus disorder prediction 18 70 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0607 Sed-Chr6:5404720 Sed08g0558 Sed-Chr8:3755793 7.00E-78 dispersed
Sed06g0607 Sed-Chr6:5404720 Sed08g1351 Sed-Chr8:28090916 1.10E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38828 PF00847 AP2 8.70E-09 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0607 - - - 0.0