Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0609 ATGTATGGTTTCGAAGCGCTTACGTTCAACGTTCATGGAGGATATTTGGAGGCCATTGTTCGGGGACATAGGGCTGGCTTGCTGACTGCCGCTGATTACAACAATTTGTGTCAGTGCGAAACCCTGGATGATATCAAGATGCACCTCTCTGCTACTGAGTACGGCCCTTATCTCCAAAACGAACCATCTCCATTGCATACAACAACAATTGTGGAAAAATGCACCCTTAAATTGGTTGATGAGTATAAACACATGCTGTGCCAAGCCACAGAGCCCCTGTCTACATTCTTGGAGTATATCACATATGGTCACATGATAGACAATGTTGTACTTATCGTTACTGGAACCTTACATGAGAGAGATGTTCAGGAACTGTTGGAGAAGTGCCACCCTTTGGGCATGTTTGATAGCATTGCTACCTTGGCAGTTGCCCAGAATATGCGTGAACTTTATAGATTGGTGCTTGTTGACACTCCATTGGCTCCATACTTCTCTGAATGTATCACTTCTGAGGATTTGGATGACATGAACATAGAAATAATGAGGAACACTCTCTACAAGGCATACCTAGAGGATTTCTACAGGTTCTGTCAGAAACTGGGTGGTGCCACTGCTGAAATTATGTCTGACCTCCTCGCTTTCGAGGCTGATAGAAGGGCTGTCAATATTACCATAAATAGTATTGGCACCGAGCTTACTCGAGATGACCGAAGAAAGTTATATTCCCGTTTTGGTTTACTTTATCCCTATGGTCATGAAGAGCTCGCTATCTGTGAGGATATTGATCAGGTTCGCGGTGCGATGGAAAAATACCCTGCCTACCAGTCAATTTTTTCTAAGCTGTCATATGGAGAAAGCCAGATGCTCGACAAGGCATTCTATGAAGAGGAGGTGAAAAGGCTATGCTTAGCATTTGAGCAACAGTTCCATTATGGTGTTTTCTTTGCATACATGAGGCTGAGAGAACAAGAGATTAGAAACCTAATGTGGATCTCGGAATGCGTCGCTCAGAACCAGAAGTCGAGGGTTCATGACAGCGTTGTTTTCATATTTTAG 1056 43.66 MYGFEALTFNVHGGYLEAIVRGHRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYRFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSRFGLLYPYGHEELAICEDIDQVRGAMEKYPAYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVVFIF 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5412909 5417418 - Sed0008481.1 Sed06g0609 717152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0609 351 FunFam V-type proton ATPase subunit 91 205 - -
Sed06g0609 351 FunFam V-type proton ATPase subunit 14 128 - -
Sed06g0609 351 Gene3D - 91 199 IPR035067 -
Sed06g0609 351 Pfam ATP synthase (C/AC39) subunit 16 344 IPR002843 GO:0046961(InterPro)
Sed06g0609 351 FunFam V-type proton ATPase subunit 206 309 - -
Sed06g0609 351 Gene3D ATP synthase (C/AC39) subunit, domain 3 14 335 IPR044911 -
Sed06g0609 351 SUPERFAMILY V-type ATP synthase subunit C 14 349 IPR036079 -
Sed06g0609 351 PIRSF V-ATP_synth_D 4 350 IPR016727 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed06g0609 351 Gene3D - 206 309 IPR035067 -
Sed06g0609 351 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT AC39 1 351 IPR016727 GO:0007034(PANTHER)|GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0609 Sed-Chr6:5412909 Sed08g1348 Sed-Chr8:28048205 1.70E-203 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0609 K02146 - csv:101203260 709.909