Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0625 ATGGATTTGACTCCAGAAATTTCCACCGCCGCCGCCAACATTATCACCGGCGGCGGAGCAGCGAAATCCCCTGAATTGGAAGTTGAAACACCCACCAAATCTCAGCCGTACACCAACGGCGTCCTGAAGCGCCACCACCACACAGCGGCGCCTCCGCCGCCGGTGCTCTACAAAGAATGCCTCAAGAATCACGCCGCCAGTTTGGGCGGCCATGCATTAGACGGCTGCGGCGAATTCATGCCCTCTCCGACCGCCACCGCCGCCGATCCCACCTCCCTCAAATGCGCCGCCTGCGGCTGCCACCGAAATTTCCACCGCCGCGAGCCGGAGGACCCAATCGCAAATCCGACCACAACCCATGTCATAGAATACCAACCCCACCACCGTCACCACCCGCCGCCGCCCACGGCGGGGCCGCCCTACCGGAGCCCAAGCTCTGCCTCCCCTCCGCCGATCTCCTCCTCGTACTACCCCTCCGTCCCCCACATGCTCCTCGCCCTCTCCGGCGGCATGCCGGAGCACGGTGGCGGCGGCGGATTCCATCACTCGATTCCGACGCCGACCCGGAATTCGAAAAAGCGATTCAGAACGAAATTCACTCAAAATCAGAAGGAAAGAATGTATGAATTTGCTGAAAAAGTTGAATGGAAGATTCAGAAACGAGATGAGGATTTGATCCGTGAATTCTGCAGCGATGTCGGAGTTGAAAGAGGCGTTTTCAAAGTTTGGATGCACAACAACAAGAACACTTTGGCCAAGAAAGACGGCGAACATAACATCAACGGCGGCGAAGGCGATGAAAAAATTAACGGCGACGGCGAGCCACACGCCGCCGCAAATGGGTCCTCTTCATCCTCTTGA 861 57.84 MDLTPEISTAAANIITGGGAAKSPELEVETPTKSQPYTNGVLKRHHHTAAPPPPVLYKECLKNHAASLGGHALDGCGEFMPSPTATAADPTSLKCAACGCHRNFHRREPEDPIANPTTTHVIEYQPHHRHHPPPPTAGPPYRSPSSASPPPISSSYYPSVPHMLLALSGGMPEHGGGGGFHHSIPTPTRNSKKRFRTKFTQNQKERMYEFAEKVEWKIQKRDEDLIREFCSDVGVERGVFKVWMHNNKNTLAKKDGEHNINGGEGDEKINGDGEPHAAANGSSSSS 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5695001 5696194 - Sed0023473.1 Sed06g0625 717168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0625 286 MobiDBLite consensus disorder prediction 252 273 - -
Sed06g0625 286 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 57 108 IPR006456 -
Sed06g0625 286 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 57 108 IPR006456 -
Sed06g0625 286 MobiDBLite consensus disorder prediction 125 154 - -
Sed06g0625 286 MobiDBLite consensus disorder prediction 168 194 - -
Sed06g0625 286 MobiDBLite consensus disorder prediction 15 39 - -
Sed06g0625 286 NCBIfam homeobox domain, ZF-HD class 192 249 IPR006455 -
Sed06g0625 286 FunFam Zinc-finger homeodomain protein 2 180 253 - -
Sed06g0625 286 Pfam ZF-HD protein dimerisation region 55 109 IPR006456 -
Sed06g0625 286 SUPERFAMILY Homeodomain-like 184 253 IPR009057 -
Sed06g0625 286 Gene3D - 182 254 - -
Sed06g0625 286 MobiDBLite consensus disorder prediction 252 286 - -
Sed06g0625 286 MobiDBLite consensus disorder prediction 131 147 - -
Sed06g0625 286 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 32 250 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0625 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0625 Sed-Chr6:5695001 Sed14g1123 Sed-Chr14:20699515 3.20E-35 dispersed
Sed03g0208 Sed-Chr3:1296996 Sed06g0625 Sed-Chr6:5695001 1.30E-12 wgd
Sed06g0625 Sed-Chr6:5695001 Sed08g1335 Sed-Chr8:27834420 7.10E-88 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g0182 . 47 238 ZF-HD Transcription Factor Family AT5G65410 55.7 8.1e-44 175.3
Sed04g0182 . 1 234 ZF-HD Transcription Factor Family AT4G24660 50.4 1.8e-52 203.8
Sed07g1780 . 60 207 ZF-HD Transcription Factor Family AT4G24660 52.7 1.4e-41 167.5
Sed04g0182 . 49 237 ZF-HD Transcription Factor Family AT2G02540 52.7 7.9e-40 162.2
Sed02g0002 . 75 279 ZF-HD Transcription Factor Family AT1G14440 52.0 2.2e-50 197.2
Sed03g0209 . 12 257 ZF-HD Transcription Factor Family AT5G15210 57.3 1.3e-51 201.1
Sed08g1335 . 13 263 ZF-HD Transcription Factor Family AT5G15210 56.2 2.3e-51 200.3
Sed06g0625 . 23 286 ZF-HD Transcription Factor Family AT5G15210 50.4 2.1e-44 177.2
Sed08g1335 . 23 251 ZF-HD Transcription Factor Family AT3G28920 64.0 1.7e-58 224.2
Sed03g0209 . 10 259 ZF-HD Transcription Factor Family AT3G28920 57.6 3.8e-58 223.0
Sed06g0625 . 22 250 ZF-HD Transcription Factor Family AT3G28920 60.2 1.5e-51 201.1
Sed03g0209 . 12 270 ZF-HD Transcription Factor Family AT5G39760 53.1 1.3e-51 201.4
Sed08g1335 . 31 256 ZF-HD Transcription Factor Family AT5G39760 56.4 7.2e-47 185.7
Sed06g0625 . 30 273 ZF-HD Transcription Factor Family AT5G39760 58.4 1.4e-45 181.4
Sed08g1335 . 62 252 ZF-HD Transcription Factor Family AT1G69600 50.5 7.5e-46 181.8
Sed04g0182 . 49 237 ZF-HD Transcription Factor Family AT2G02540 52.7 7.9e-40 162.2
Sed04g0182 . 1 234 ZF-HD Transcription Factor Family AT4G24660 50.4 1.8e-52 203.8
Sed07g1780 . 60 207 ZF-HD Transcription Factor Family AT4G24660 52.7 1.4e-41 167.5
Sed03g0209 . 12 270 ZF-HD Transcription Factor Family AT5G39760 53.1 1.3e-51 201.4
Sed08g1335 . 31 256 ZF-HD Transcription Factor Family AT5G39760 56.4 7.2e-47 185.7
Sed06g0625 . 30 273 ZF-HD Transcription Factor Family AT5G39760 58.4 1.4e-45 181.4
Sed04g0182 . 47 238 ZF-HD Transcription Factor Family AT5G65410 55.7 8.1e-44 175.3
Sed08g1335 . 62 252 ZF-HD Transcription Factor Family AT1G69600 50.5 7.5e-46 181.8
Sed03g0209 . 12 257 ZF-HD Transcription Factor Family AT5G15210 57.3 1.3e-51 201.1
Sed08g1335 . 13 263 ZF-HD Transcription Factor Family AT5G15210 56.2 2.3e-51 200.3
Sed06g0625 . 23 286 ZF-HD Transcription Factor Family AT5G15210 50.4 2.1e-44 177.2
Sed02g0002 . 75 279 ZF-HD Transcription Factor Family AT1G14440 52.0 2.2e-50 197.2
Sed08g1335 . 23 251 ZF-HD Transcription Factor Family AT3G28920 64.0 1.7e-58 224.2
Sed03g0209 . 10 259 ZF-HD Transcription Factor Family AT3G28920 57.6 3.8e-58 223.0
Sed06g0625 . 22 250 ZF-HD Transcription Factor Family AT3G28920 60.2 1.5e-51 201.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38830 PF04770 ZF-HD_dimer 1.80E-29 No_clan Sed TF