Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0625 ATGGATTTGACTCCAGAAATTTCCACCGCCGCCGCCAACATTATCACCGGCGGCGGAGCAGCGAAATCCCCTGAATTGGAAGTTGAAACACCCACCAAATCTCAGCCGTACACCAACGGCGTCCTGAAGCGCCACCACCACACAGCGGCGCCTCCGCCGCCGGTGCTCTACAAAGAATGCCTCAAGAATCACGCCGCCAGTTTGGGCGGCCATGCATTAGACGGCTGCGGCGAATTCATGCCCTCTCCGACCGCCACCGCCGCCGATCCCACCTCCCTCAAATGCGCCGCCTGCGGCTGCCACCGAAATTTCCACCGCCGCGAGCCGGAGGACCCAATCGCAAATCCGACCACAACCCATGTCATAGAATACCAACCCCACCACCGTCACCACCCGCCGCCGCCCACGGCGGGGCCGCCCTACCGGAGCCCAAGCTCTGCCTCCCCTCCGCCGATCTCCTCCTCGTACTACCCCTCCGTCCCCCACATGCTCCTCGCCCTCTCCGGCGGCATGCCGGAGCACGGTGGCGGCGGCGGATTCCATCACTCGATTCCGACGCCGACCCGGAATTCGAAAAAGCGATTCAGAACGAAATTCACTCAAAATCAGAAGGAAAGAATGTATGAATTTGCTGAAAAAGTTGAATGGAAGATTCAGAAACGAGATGAGGATTTGATCCGTGAATTCTGCAGCGATGTCGGAGTTGAAAGAGGCGTTTTCAAAGTTTGGATGCACAACAACAAGAACACTTTGGCCAAGAAAGACGGCGAACATAACATCAACGGCGGCGAAGGCGATGAAAAAATTAACGGCGACGGCGAGCCACACGCCGCCGCAAATGGGTCCTCTTCATCCTCTTGA 861 57.84 MDLTPEISTAAANIITGGGAAKSPELEVETPTKSQPYTNGVLKRHHHTAAPPPPVLYKECLKNHAASLGGHALDGCGEFMPSPTATAADPTSLKCAACGCHRNFHRREPEDPIANPTTTHVIEYQPHHRHHPPPPTAGPPYRSPSSASPPPISSSYYPSVPHMLLALSGGMPEHGGGGGFHHSIPTPTRNSKKRFRTKFTQNQKERMYEFAEKVEWKIQKRDEDLIREFCSDVGVERGVFKVWMHNNKNTLAKKDGEHNINGGEGDEKINGDGEPHAAANGSSSSS 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5695001 5696194 - Sed0023473.1 Sed06g0625 717168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0625 286 MobiDBLite consensus disorder prediction 252 273 - -
Sed06g0625 286 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 57 108 IPR006456 -
Sed06g0625 286 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 57 108 IPR006456 -
Sed06g0625 286 MobiDBLite consensus disorder prediction 125 154 - -
Sed06g0625 286 MobiDBLite consensus disorder prediction 168 194 - -
Sed06g0625 286 MobiDBLite consensus disorder prediction 15 39 - -
Sed06g0625 286 NCBIfam homeobox domain, ZF-HD class 192 249 IPR006455 -
Sed06g0625 286 FunFam Zinc-finger homeodomain protein 2 180 253 - -
Sed06g0625 286 Pfam ZF-HD protein dimerisation region 55 109 IPR006456 -
Sed06g0625 286 SUPERFAMILY Homeodomain-like 184 253 IPR009057 -
Sed06g0625 286 Gene3D - 182 254 - -
Sed06g0625 286 MobiDBLite consensus disorder prediction 252 286 - -
Sed06g0625 286 MobiDBLite consensus disorder prediction 131 147 - -
Sed06g0625 286 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 32 250 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0625 Sed-Chr6:5695001 Sed14g1123 Sed-Chr14:20699515 3.20E-35 dispersed
Sed03g0208 Sed-Chr3:1296996 Sed06g0625 Sed-Chr6:5695001 1.30E-12 wgd
Sed06g0625 Sed-Chr6:5695001 Sed08g1335 Sed-Chr8:27834420 7.10E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38830 PF04770 ZF-HD_dimer 1.80E-29 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0625 - - - 0.0