Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0627 ATGGCAAACGAAGAATCCTTCATCTCAATCGGAAACGAATTCCCAGATCCCCAACAATCCTTTTTCCGCCAAAGATTCCACCAATTTTGCCCTCCAAATCTCTCCCAAAAGCTTATGGCGGAGCTGATTTCTACTTTTCTGCTGGTGTTTGTCACGTGCGGGGCGGCGGCATTGAGCGCCGCCGATGAGCGGCACGTGTCGAACCTCGCCGCCTCCATCGCCGGCGGCCTGATTGTGACGGTCATGATTTACGCCGTCGGTCATATCTCCGGCGCACATATGAATCCGGCCGTTACTTTTGCTTTTGCTTCTGTTCGTCGATTCCCTTGGAAGCAGGTTCCATTATATGCAGCAGCTCAACTAACTGGAGCTACATCAGCAGCCTTTACACTGCACATATTATTAGACCCAATTAAAGAAATAGGAATTACAACACCTTGTGGACCTGAACTAAAATCACTTCTCATGGAAATTGTTGTCTCATTTTGTATGATGTTTGTCACTTCTGCAGTTGCTACCGATACAAAAGCGATAGGAGAGCTTGCAGGTATAGCTGTGGGTTCAGCTGTTTGCATCTCATCCATCTTTGCAGGGCCTATATCGGGTGGGTCGATGAACCCTGCGAGGTCAATTGGACCTGCGATTGCTAGTTCTCATTACGAAGGGATTTGGGTGTACGTAGTCGGACCAGTTGTAGGGACATTGTTGGGAGCATGGTCATATAATTTCATACGAACAAGTGAAAAACACGAACATTCATTTTTGCTACATTGA 774 47.16 MANEESFISIGNEFPDPQQSFFRQRFHQFCPPNLSQKLMAELISTFLLVFVTCGAAALSAADERHVSNLAASIAGGLIVTVMIYAVGHISGAHMNPAVTFAFASVRRFPWKQVPLYAAAQLTGATSAAFTLHILLDPIKEIGITTPCGPELKSLLMEIVVSFCMMFVTSAVATDTKAIGELAGIAVGSAVCISSIFAGPISGGSMNPARSIGPAIASSHYEGIWVYVVGPVVGTLLGAWSYNFIRTSEKHEHSFLLH 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5774913 5779307 - Sed0015326.1 Sed06g0627 717170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0627 257 Gene3D Glycerol uptake facilitator protein. 15 253 IPR023271 -
Sed06g0627 257 PRINTS Major intrinsic protein family signature 156 174 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g0627 257 PRINTS Major intrinsic protein family signature 187 209 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g0627 257 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g0627 257 PRINTS Major intrinsic protein family signature 112 131 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g0627 257 PRINTS Major intrinsic protein family signature 224 244 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g0627 257 PRINTS Major intrinsic protein family signature 75 99 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g0627 257 ProSitePatterns MIP family signature. 93 101 IPR022357 -
Sed06g0627 257 PANTHER AQUAPORIN NIP2-1 30 249 IPR034294 -
Sed06g0627 257 Pfam Major intrinsic protein 34 241 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g0627 257 SUPERFAMILY Aquaporin-like 27 249 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0627 Sed-Chr6:5774913 Sed08g1333 Sed-Chr8:27765406 9.50E-116 dispersed
Sed06g0627 Sed-Chr6:5774913 Sed06g0628 Sed-Chr6:5809705 1.30E-93 tandem
Sed06g0627 Sed-Chr6:5774913 Sed08g1332 Sed-Chr8:27656210 3.00E-93 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0627 K09874 - csv:101205456 384.415