Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0628 ATGAGTTCTGTCCAAGATCCTCAGTTGGCTAACCAAGAAGCTGTTGTTGATGTTGAAGATTTTGTCTCTGTTGAAAACCCTGATTCCAAACGCTCCAAGTTTTTTGGATCTTTATTCCAAAACCATTACCCTCCTGGGTTTTCCCGAAAGCTTGTGGCGGAGGTAATAGCAACATATTTGCTAGTGTTCGTGACATGCGGAGCGGGGGCGTTGAATGCGAGCGATCCAACGAGAGTGTCGCAGCTCGGTGCCTCCGTGGCAGGCGGTCTGATCGTGACAGTCATGATCTACGCGGTCGGACATATTTCGGGCGCTCACATGAACCCGGCAGTCACCACAGCTTTTGCTGCAACTCGACACTTTCCATGGAAACAGGTTCCATTGTATGCCATGGCGCAGTTGAGTGGAGCAACATGTGCAGCTTTTACATTGCGTTTATTATTGCATCCAATCAAACATTTGGGAACCACATCGCCTGCTGGATCGGATTTGCAAGCACTGGTTATGGAGATAGTTGTTACTTTCTCCATGATGTTTGTTACATGCGCTGTTGCAACTGACACGAAAGCAGTAGGAGAACTTGCAGGTTTGGCAGTTGGTTCAGCTGTGTGTATCACATCCATCTTAGCTGGACCTGTATCAGGAGGGTCCATGAACCCTGTGAGGACCTTAGGACCTGCAATGGCAAGTGACTATTATAAAGGGATTTGGGTGTACTTTGTTGGGCCAATTACAGGAACATTACTGGGAGCATGGTCGTATAAGTTTATACGTACCATTGACAAACCTGTGCACTTAATTTCTCCTCACTCATTTTCATTCAAACTTCGAAAAATGTCGAGATCGAACACTGGCGAAGGTGAAAGATGA 870 46.67 MSSVQDPQLANQEAVVDVEDFVSVENPDSKRSKFFGSLFQNHYPPGFSRKLVAEVIATYLLVFVTCGAGALNASDPTRVSQLGASVAGGLIVTVMIYAVGHISGAHMNPAVTTAFAATRHFPWKQVPLYAMAQLSGATCAAFTLRLLLHPIKHLGTTSPAGSDLQALVMEIVVTFSMMFVTCAVATDTKAVGELAGLAVGSAVCITSILAGPVSGGSMNPVRTLGPAMASDYYKGIWVYFVGPITGTLLGAWSYKFIRTIDKPVHLISPHSFSFKLRKMSRSNTGEGER 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5809705 5815587 - Sed0022200.1 Sed06g0628 717171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0628 289 PRINTS Major intrinsic protein family signature 49 68 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g0628 289 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g0628 289 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g0628 289 PRINTS Major intrinsic protein family signature 237 257 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g0628 289 PRINTS Major intrinsic protein family signature 200 222 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g0628 289 PRINTS Major intrinsic protein family signature 169 187 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g0628 289 Gene3D Glycerol uptake facilitator protein. 8 265 IPR023271 -
Sed06g0628 289 PANTHER AQUAPORIN NIP2-1 37 260 IPR034294 -
Sed06g0628 289 Pfam Major intrinsic protein 47 254 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g0628 289 FunFam Aquaporin NIP2-1 39 267 - -
Sed06g0628 289 SUPERFAMILY Aquaporin-like 43 267 IPR023271 -
Sed06g0628 289 CDD MIP 49 257 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0628 Sed-Chr6:5809705 Sed08g1332 Sed-Chr8:27656210 9.90E-146 dispersed
Sed06g0627 Sed-Chr6:5774913 Sed06g0628 Sed-Chr6:5809705 1.30E-93 tandem
Sed06g0628 Sed-Chr6:5809705 Sed06g0629 Sed-Chr6:5809705 1.40E-112 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0628 K09874 - csv:101205692 505.753