Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0629 ATGAGTTCTGTCCAAGATCCTCAGTTGGCTAACCAAGAAGCTGTTGTTGATGTTGAAGATTTTGTCTCTGTTGAAAACCCTGATTCCAAACGCTCCAAGTTTTTTGGATCTTTATTCCAAAACCATTACCCTCCTGGGTTTTCCCGAAAGCTTGTGGCGGAGGTAATAGCAACATATTTGCTAGTGTTCGTGACATGCGGAGCGGGGGCGTTGAATGCGAGCGATCCAACGAGAGTGTCGCAGCTCGGTGCCTCCGTGGCAGGCGGTCTGATCGTGACAGTCATGATCTACGCGGTCGGACATATTTCGGGCGCTCACATGAACCCGGCAGTCACCACAGCTTTTGCTGCAACTCGACACTTTCCATGGAAACAGGTTCCATTGTATGCCATGGCGCAGTTGAGTGGAGCAACATGTGCAGCTTTTACATTGCGTTTATTATTGCATCCAATCAAACATTTGGGAACCACATCGCCTGCTGGATCGGATTTGCAAGCACTGGTTATGGAGATAGTTGTTACTTTCTCCATGATGTTTGTTACATGCGCTGTTGCAACTGACACGAAAGCAGTAGGAGAACTTGCAGGTTTGGCAGTTGGTTCAGCTGTGTGTATCACATCCATCTTAGCTGGGTAA 636 47.96 MSSVQDPQLANQEAVVDVEDFVSVENPDSKRSKFFGSLFQNHYPPGFSRKLVAEVIATYLLVFVTCGAGALNASDPTRVSQLGASVAGGLIVTVMIYAVGHISGAHMNPAVTTAFAATRHFPWKQVPLYAMAQLSGATCAAFTLRLLLHPIKHLGTTSPAGSDLQALVMEIVVTFSMMFVTCAVATDTKAVGELAGLAVGSAVCITSILAG 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5809705 5815587 - Sed0022200.2 Sed06g0629 717172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0629 211 PANTHER AQUAPORIN NIP2-1 36 211 IPR034294 -
Sed06g0629 211 Pfam Major intrinsic protein 47 210 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g0629 211 Gene3D Glycerol uptake facilitator protein. 7 211 IPR023271 -
Sed06g0629 211 PRINTS Major intrinsic protein family signature 49 68 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g0629 211 PRINTS Major intrinsic protein family signature 169 187 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g0629 211 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g0629 211 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g0629 211 SUPERFAMILY Aquaporin-like 43 209 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0629 Sed-Chr6:5809705 Sed08g1332 Sed-Chr8:27656210 1.20E-103 dispersed
Sed06g0628 Sed-Chr6:5809705 Sed06g0629 Sed-Chr6:5809705 1.40E-112 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0629 K09874 - csv:101205692 372.089