Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed06g0634 | ATGGAGATGGAATGGAAATGGATATGGATGATGGGGATGTGGATGCTGGTTTATTCAGGATGGAGGATTTTGAATTGGATTTGGGTGAACCCTAAGCGACTTGAAACCTGCCTGAGACAGCAAGGCCTGGCCGGAAACCCTTACCGCCTTCTCTTCGGTGATTCCAAAGACATCGCCGCCGCCATCCGCCGTGCCAGAACTCACTCCATGCCTTTCTCTCATGATATTGCTTCACGTGCCGCCCCTACCTCTAATGTCACTATCAACAAATACGGTAAGGATTCATTCGCGTGGGTTGGCACAACTCCAAGAGTTTATATCACAGATCCTGAACAAGTGAAGATTGTTTTCTCTCAAATCAATGATTTTCGTAAGACATCCTCTCTTCCCTTAAGAAGAAAAAAAGAAGAAGGTGGAGTTGTCGCTCTCGAGGGACCTAAATGGGTTATGCATAGAAAGATCATCAACCCTGCATTTCACATGGAGAAGTTGAAGGTGATGTTTCCAGCATTCTCCAAAAGTTGTACCGAGATGGTTAACAAATGGGAAATGGCGATATCTGAAGAGGGGAGTTGTGAAATAGATGTGTTTCCGGATTTGCAAAATATGACTGCAGATGTGATTTCTCGAACTGCATTTGGCAGTAGCTATGATGAAGGGAAAAAAATCTTCCAGCTCTTGAAACAGGGGGTTGGGCTATTGATGACTTCCATAATGAAAAAAGTTTATTACATTCCAGGATGGAGGTTTGTACCAACCAAGTTAAACAAGAGAATGGATGAAATTGATGGCAAAATAAACGACTTGATTCGAGGTATTGTAAGCAAAAGACAAAATGTTATGAGAACAAGTGAAGCTCCCAATGATGATTTGTTAGGGATCCTTTTAGAATCAAATTCAAATCAAATTCAAGCAAACCAAAACAAAAAAGATGTGGGAATGAGTATCGAAGAAGTAATTAATGAATGCAAGGTTTTCTATTTTGCTGGCCAAGAAACCACAGCTACATTGCTTGCTTGGACTATGATTTTACTTGGTCGATACTCCAAGTGGCAAGATCGAGCACGAGCAGAAGTCCTTGAGGTTTTTGGTCATGATAAGAAATTGGATTTTGATGGTCTAAGTCGCCTTAAAATAGTAACTATGATCCTAAACGAGGTTTTAAGGCTATACCCTTCAGTTAGTTTGCTAGTTCGAGAGATTCACAAAGAAATAAAGCTACAAAATTTAACATTACCAGGTGGAATAACAATAGGCATTCCAATTATATCCATCCACCAAAACACTAAAATATGGGGAGAAGATGCAATGGAATTCAAACCAGAAAGATTTTCAGAAGGGATATCCAAAGCAACAAACAATCAAGTATGCTTCATTCCTTTCGGATGGGGTCCTCGAATCTGTCTCGGTCAAAACTTTGCGATGATTGAAGCAAAGATAGCAATATCCATGATTTTGCAGCGATTCACTTTCCAACTTTCTCCATCTTATACTCATGCTCCTGTCACGAACGTCACTATTCAGCCACAACATGGAGCCCATCTTGTCCTTCGTAAGCTTTAA | 1563 | 40.63 | MEMEWKWIWMMGMWMLVYSGWRILNWIWVNPKRLETCLRQQGLAGNPYRLLFGDSKDIAAAIRRARTHSMPFSHDIASRAAPTSNVTINKYGKDSFAWVGTTPRVYITDPEQVKIVFSQINDFRKTSSLPLRRKKEEGGVVALEGPKWVMHRKIINPAFHMEKLKVMFPAFSKSCTEMVNKWEMAISEEGSCEIDVFPDLQNMTADVISRTAFGSSYDEGKKIFQLLKQGVGLLMTSIMKKVYYIPGWRFVPTKLNKRMDEIDGKINDLIRGIVSKRQNVMRTSEAPNDDLLGILLESNSNQIQANQNKKDVGMSIEEVINECKVFYFAGQETTATLLAWTMILLGRYSKWQDRARAEVLEVFGHDKKLDFDGLSRLKIVTMILNEVLRLYPSVSLLVREIHKEIKLQNLTLPGGITIGIPIISIHQNTKIWGEDAMEFKPERFSEGISKATNNQVCFIPFGWGPRICLGQNFAMIEAKIAISMILQRFTFQLSPSYTHAPVTNVTIQPQHGAHLVLRKL | 520 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 5959128 | 5982548 | + | Sed0008470.1 | Sed06g0634 | 717177 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed06g0634 | 520 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 461 | 470 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed06g0634 | 520 | PRINTS | P450 superfamily signature | 329 | 346 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g0634 | 520 | PRINTS | P450 superfamily signature | 468 | 479 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g0634 | 520 | PRINTS | P450 superfamily signature | 382 | 393 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g0634 | 520 | PRINTS | P450 superfamily signature | 459 | 468 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g0634 | 520 | SUPERFAMILY | Cytochrome P450 | 88 | 518 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g0634 | 520 | FunFam | Cytochrome P450 734A1 | 28 | 520 | - | - | |
| Sed06g0634 | 520 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 16 | 513 | IPR050665 | GO:0004497(PANTHER) | |
| Sed06g0634 | 520 | Pfam | Cytochrome P450 | 89 | 496 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g0634 | 520 | PRINTS | E-class P450 group I signature | 338 | 364 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g0634 | 520 | PRINTS | E-class P450 group I signature | 318 | 335 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g0634 | 520 | PRINTS | E-class P450 group I signature | 458 | 468 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g0634 | 520 | PRINTS | E-class P450 group I signature | 88 | 107 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g0634 | 520 | PRINTS | E-class P450 group I signature | 381 | 399 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g0634 | 520 | PRINTS | E-class P450 group I signature | 203 | 221 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g0634 | 520 | PRINTS | E-class P450 group I signature | 468 | 491 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g0634 | 520 | Gene3D | Cytochrome P450 | 80 | 519 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed06g0634 | Sed-Chr6:5959128 | Sed06g0636 | Sed-Chr6:5988054 | 6.10E-178 | dispersed | |
| Sed06g0632 | Sed-Chr6:5927922 | Sed06g0634 | Sed-Chr6:5959128 | 3.60E-163 | proximal | |
| Sed06g0634 | Sed-Chr6:5959128 | Sed06g0635 | Sed-Chr6:5988054 | 6.10E-271 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed06g0634 | - | - | - | 0.0 |