Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed06g0671 | ATGTGGCTTGGGCCCTATCCAAGAGTGAACATCCTGGACCCTGAACAATTCAAAGCTGCCTTTTCTCTGGTCTATGATGTTCCAAAGCCAAGTTTCAACCCTCTTGTCAAGTTTCTTTTGGATGGACTTGCTAGTCATGAAGGAGCCAAATGGGCTAAACATAGGAAGATAATCAACCCTGCATTTCATTTTGAAAGGTTGAAGGACATGGTGCCAAAAATGTTTGAGAGTTGCAATGAGTTGATTGGAAAATGGGAAAGAATGATCTCAAGAGAAGGATTTTGTGAATTGGACGTGATGCCTCATTTGCAAACTCTAGCAGCTGATGTCATTTCTCGAGCAGCATTTGGAAGTAGCTATCAAGAAGGACAAATTATCTTTCAACATCTAAAAGAATTGACTATAATGATCCTTGAAGCTGTCTCTGTAGTTTACATACCAGGATGGAGGTTTTTACCAACCAAGTCAAACAATAGAATGAATAAGATGCGTAAAGAAATAAAAGCAATGCTCTTGTCTGTTATCAACAAAAGACAAAGGGCAATGAAGGCAGGTGAAACTATACAAACTGATGTGTTAACCATTCTCTTAGAATCAAATTTCAACGAAATTCGAGAAAACGGAAACAACGATAAGGTTGGAATGACCATAGAAGACGTGGTCGAAGAATGTAAGCTTTTCTACTTTGCTGGCCAAGAAACCACAGCAATGTTACTGGTTTGGACCATGATTTTGTTGGGTTCATCTTCAAAATGGCAAGATCGAGCAAGAGCAGAGGTTCTCCAAGTCTTTGGCAACAACAAACCAGATTTTGATGGTTTAAATCGCCTAAAAGTTGTTGCTATGATTCTGAACGAGGTTCTCAGATTATATCCACCGGGAGGAGCGTTTAGTCGCGTTGTTCAAAAGGAAACAAAGCTTGGGAACGTGACATTACCAGCTGGAGTGATGTTGAGTTTCCCAATTGTTCTTATCCATAGAGATCAAGAGCTATGGGGAGAAGATGCAAATGAGTTCAATCCAGAAAGATTTGCAGAGGGAATTTCAAAAGCAACAATTAATAATCAAATTGGGTTCTTCCCATTTGGATGGGGTCCAAGAATATGCATTGGACAAAATTTTTCAATGATTGAGGCCAAAATGGCATTATCTATGATCCTACAAAACTTCTCATTTGAACTTTCTTCATCCTACACTCATGCTCCTGTATCCATTTTCACCATTCAACCTCAGCATGGAGCTCATATCATTCTGCATAAACTTTAG | 1266 | 39.26 | MWLGPYPRVNILDPEQFKAAFSLVYDVPKPSFNPLVKFLLDGLASHEGAKWAKHRKIINPAFHFERLKDMVPKMFESCNELIGKWERMISREGFCELDVMPHLQTLAADVISRAAFGSSYQEGQIIFQHLKELTIMILEAVSVVYIPGWRFLPTKSNNRMNKMRKEIKAMLLSVINKRQRAMKAGETIQTDVLTILLESNFNEIRENGNNDKVGMTIEDVVEECKLFYFAGQETTAMLLVWTMILLGSSSKWQDRARAEVLQVFGNNKPDFDGLNRLKVVAMILNEVLRLYPPGGAFSRVVQKETKLGNVTLPAGVMLSFPIVLIHRDQELWGEDANEFNPERFAEGISKATINNQIGFFPFGWGPRICIGQNFSMIEAKMALSMILQNFSFELSSSYTHAPVSIFTIQPQHGAHIILHKL | 421 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 6309800 | 6315286 | - | Sed0022198.2 | Sed06g0671 | 717214 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed06g0671 | 421 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 1 | 413 | IPR050665 | GO:0004497(PANTHER) | |
| Sed06g0671 | 421 | Gene3D | Cytochrome P450 | 1 | 420 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g0671 | 421 | PRINTS | P450 superfamily signature | 230 | 247 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g0671 | 421 | PRINTS | P450 superfamily signature | 282 | 293 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g0671 | 421 | PRINTS | P450 superfamily signature | 369 | 380 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g0671 | 421 | PRINTS | P450 superfamily signature | 360 | 369 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g0671 | 421 | SUPERFAMILY | Cytochrome P450 | 1 | 419 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g0671 | 421 | Pfam | Cytochrome P450 | 1 | 396 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g0671 | 421 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 362 | 371 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed06g0671 | 421 | PRINTS | E-class P450 group I signature | 359 | 369 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g0671 | 421 | PRINTS | E-class P450 group I signature | 322 | 346 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g0671 | 421 | PRINTS | E-class P450 group I signature | 239 | 265 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g0671 | 421 | PRINTS | E-class P450 group I signature | 106 | 124 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g0671 | 421 | PRINTS | E-class P450 group I signature | 219 | 236 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed06g0671 | 421 | PRINTS | E-class P450 group I signature | 369 | 392 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed06g0671 | Sed-Chr6:6309800 | Sed12g1720 | Sed-Chr12:28384951 | 4.80E-125 | dispersed | |
| Sed06g0670 | Sed-Chr6:6309800 | Sed06g0671 | Sed-Chr6:6309800 | 4.20E-248 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed06g0671 | - | - | - | 0.0 |