Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0763 ATGGACATCTCGTCGACGGAAATGGAGGATTCTCCGAGCAGTCCGGTGAAGGCCATGGCGGCCTTTCTAATCCGGCGCCACTCCGATGAGCTCCGTTCCATCGCTGATTCCCCTGATTCGAAACTCCATTACCCTCTTCTCATCGAGTTTGCAGAGCTAATGGACGACGACCCACCTCTCGCTCGCCTTCTCTTCTCCCATCCAACCCACTACTTGCGCCTTTTTGACGATGCTGCTCTTTGGGCTCATAAGATCATTTTGGGTGATCCGAAGGGTCGCCCAGATGGAATTAAGAAAGATTTCATTCATGTTCGTGTTAATGTCACTGGCTCCCCGCTGGAATGTCCTGAAACTTTTCCAAGCATTGGGTCTGTTAGAGTGAAGCATCGTGGAGTGCTTCTCACACTTAAAGGGACTGTGATTAGATCTGGGGCAATTAAGATGTATGAGGGGGAGAGGTGGTACATTTGCAGGAAATGCAAGCACAAGTTCCCTGTTTATCCAGAGCTAGAAACTAGAAACTCAATACAGTTACCATCATTTTGCCCCTCTCAGAGGGAAAAACCATGCGAAGGTAAAAGTTTTGAGTGCTTGGAAGGTTCTGTGGTACGCCATGATTACCAAGAGATAAAAATTCAGGAGAGTACACAAGTATTGAGTGTGGGCTCCATTCCTCGTGCTATTCTAGTCATCCTCAAGGACGACCTTGTTGACCTTGTAAAAGCTGGAGACGATGTTATTGTTACAGGAGTATTGAGTGCAAAGTGGTCCCCAGATCTCAAAGATGTACGCTGTGACCTTGATCCAATGCTAATTGCTAATCATGTGAGAACCAATGAGCTAAAGGCTGAGGTTGACATCCCTGATGAAATAATTATGAAATTTAGGCATTTCTGGTCAGATTTCAAAGAAACTCCTTTAAAAGGAAGAAATGCAATTCTAAGAGGTATATGCCCTCAAGTGTTTGGACTTTTTACTGTAAAACTTGCAGTGGCTTTAACACTCATTGGAGGTGTGCAACATGTGGATATATCTGGTACTAAAGTTCGAGGAGAATCTCATCTACTGTTGATTGGCGATCCTGGTACTGGAAAGTCACAGTTCCTGAAATTTGCTGCCAAATTGAGCAACCGGGCTGTCATTACCACTGGATTGGGAAGCACTAGCGCCGGACTAACTGTTACTGCTGTCAAGGATGGAGGGGAATGGATGCTGGAAGCTGGGGCACTTGTACTGGCAGATGGAGGACTTTGTTGCATAGATGAAGTAGACAGCATGAGAGAACATGACAGAGCCACGATCCATGAAGCAATGGAGCAACAGACTATAAGCGTTGCAAAGGCTGGTCTTGTAACAACTCTCAGTACTAGAACGATTGTATTTGGCGCAACAAATCCTAAAGGACATTACGACCCTGAACAACCTCTATCTGTCAATACAACACTCTCCGGTCCCTTATTGAGCAGATTTGATATCGTCCTTGTGCTCTTAGATACAAAAAATCCTGATTGGGATGCAGTTGTTTCATCTCATATTCTCTCCGAGTGCAAACAAGAAAAGGGAAAGTGTAACGATGATCTTTCAAGTAACTGGCCTCTTACTATGCTTCGAAGATACATCCAATTTGTGAAAGGATACTTCAGGCCGGTCCTGACTAAGGAGGCTGAGAAAATTATTTCCAACTATTATCAGCTTCAAAGAAGATCAGCAATGGATAATGCAGCCAGGACAACGGTACGCATGCTTGAAAGTTTGATTCGCCTAGCACAAGCACATGCACGGCTTATGTTCAGAAATGAGGTTACTCGGCTCGATGCTATTACAGCTATTTTATGCGTCGAATCATCCATGACGATCTCAGCATTAGTGGATAGTGTTGGGAATGCCTTGCACTCCAATTTTACCGAGAACCCAGATGAGGAATATGCAAAGCAAGAGATTTTGATCCTTGAGAAACTTCAGTCGATGGACGAATTTTCGGACATCCGCTGCTGA 1995 44.76 MDISSTEMEDSPSSPVKAMAAFLIRRHSDELRSIADSPDSKLHYPLLIEFAELMDDDPPLARLLFSHPTHYLRLFDDAALWAHKIILGDPKGRPDGIKKDFIHVRVNVTGSPLECPETFPSIGSVRVKHRGVLLTLKGTVIRSGAIKMYEGERWYICRKCKHKFPVYPELETRNSIQLPSFCPSQREKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLSVGSIPRAILVILKDDLVDLVKAGDDVIVTGVLSAKWSPDLKDVRCDLDPMLIANHVRTNELKAEVDIPDEIIMKFRHFWSDFKETPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLIGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIVFGATNPKGHYDPEQPLSVNTTLSGPLLSRFDIVLVLLDTKNPDWDAVVSSHILSECKQEKGKCNDDLSSNWPLTMLRRYIQFVKGYFRPVLTKEAEKIISNYYQLQRRSAMDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCVESSMTISALVDSVGNALHSNFTENPDEEYAKQEILILEKLQSMDEFSDIRC 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8072988 8098942 + Sed0008836.2 Sed06g0763 717306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0763 664 CDD MCM9 312 616 - -
Sed06g0763 664 SMART mcm 118 618 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed06g0763 664 Pfam MCM OB domain 124 254 IPR033762 -
Sed06g0763 664 Gene3D - 124 254 IPR012340 -
Sed06g0763 664 Gene3D - 293 621 IPR027417 -
Sed06g0763 664 Pfam MCM P-loop domain 311 514 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed06g0763 664 SUPERFAMILY Nucleic acid-binding proteins 43 261 IPR012340 -
Sed06g0763 664 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 15 647 IPR031327 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)
Sed06g0763 664 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 622 IPR027417 -
Sed06g0763 664 ProSiteProfiles MCM family domain profile. 309 512 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed06g0763 664 FunFam Probable DNA helicase MCM9 287 621 - -
Sed06g0763 664 PRINTS Mini-chromosome maintenance (MCM) protein family signature 459 471 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed06g0763 664 PRINTS Mini-chromosome maintenance (MCM) protein family signature 408 422 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed06g0763 664 PRINTS Mini-chromosome maintenance (MCM) protein family signature 486 494 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed06g0763 664 PRINTS Mini-chromosome maintenance (MCM) protein family signature 436 449 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed06g0763 664 PRINTS Mini-chromosome maintenance (MCM) protein family signature 350 365 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed06g0763 664 Gene3D - 149 205 - -
Sed06g0763 664 SMART AAA_5 351 500 IPR003593 GO:0016887(InterPro)
Sed06g0763 664 Pfam MCM AAA-lid domain 535 616 IPR041562 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0763 Sed-Chr6:8072988 Sed11g0172 Sed-Chr11:1521362 7.50E-64 dispersed
Sed06g0762 Sed-Chr6:8072988 Sed06g0763 Sed-Chr6:8072988 0.00E+00 tandem
Sed06g0763 Sed-Chr6:8072988 Sed06g0764 Sed-Chr6:8072988 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0763 K10738 - csv:101205171 1179.85