Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0764 ATGGACATCTCGTCGACGGAAATGGAGGATTCTCCGAGCAGTCCGGTGAAGGCCATGGCGGCCTTTCTAATCCGGCGCCACTCCGATGAGCTCCGTTCCATCGCTGATTCCCCTGATTCGAAACTCCATTACCCTCTTCTCATCGAGTTTGCAGAGCTAATGGACGACGACCCACCTCTCGCTCGCCTTCTCTTCTCCCATCCAACCCACTACTTGCGCCTTTTTGACGATGCTGCTCTTTGGGCTCATAAGATCATTTTGGGTGATCCGAAGGGTCGCCCAGATGGAATTAAGAAAGATTTCATTCATGTTCGTGTTAATGTCACTGGCTCCCCGCTGGAATGTCCTGAAACTTTTCCAAGCATTGGGTCTGTTAGAGTGAAGCATCGTGGAGTGCTTCTCACACTTAAAGGGACTGTGATTAGATCTGGGGCAATTAAGATGTATGAGGGGGAGAGGTGGTACATTTGCAGGAAATGCAAGCACAAGTTCCCTGTTTATCCAGAGCTAGAAACTAGAAACTCAATACAGTTACCATCATTTTGCCCCTCTCAGAGGGAAAAACCATGCGAAGGTAAAAGTTTTGAGTGCTTGGAAGGTTCTGTGGTACGCCATGATTACCAAGAGATAAAAATTCAGGAGAGTACACAAGTATTGAGTGTGGGCTCCATTCCTCGTGCTATTCTAGTCATCCTCAAGGACGACCTTGTTGACCTTGTAAAAGCTGGAGACGATGTTATTGTTACAGGAGTATTGAGTGCAAAGTGGTCCCCAGATCTCAAAGATGTACGCTGTGACCTTGATCCAATGCTAATTGCTAATCATGTGAGAAGAACCAATGAGCTAAAGGCTGAGGTTGACATCCCTGATGAAATAATTATGAAATTTAGGCATTTCTGGTCAGATTTCAAAGAAACTCCTTTAAAAGGAAGAAATGCAATTCTAAGAGGTATATGCCCTCAAGTGTTTGGACTTTTTACTGTAAAACTTGCAGTGGCTTTAACACTCATTGGAGGTGTGCAACATGTGGATATATCTGGTACTAAAGTTCGAGGAGAATCTCATCTACTGTTGATTGGCGATCCTGGTACTGGAAAGTCACAGTTCCTGAAATTTGCTGCCAAATTGAGCAACCGGGCTGTCATTACCACTGGATTGGGAAGCACTAGCGCCGGACTAACTGTTACTGCTGTCAAGGATGGAGGGGAATGGATGCTGGAAGCTGGGGCACTTGTACTGGCAGATGGAGGACTTTGTTGCATAGATGAAGTAGACAGCATGAGAGAACATGACAGAGCCACGATCCATGAAGCAATGGAGCAACAGACTATAAGCGTTGCAAAGGCTGGTCTTGTAACAACTCTCAGTACTAGAACGATTGTATTTGGCGCAACAAATCCTAAAGGACATTACGACCCTGAACAACCTCTATCTGTCAATACAACACTCTCCGGTCCCTTATTGAGCAGATTTGATATCGTCCTTGTGCTCTTAGATACAAAAAATCCTGATTGGGATGCAGTTGTTTCATCTCATATTCTCTCCGAGTGCAAACAAGAAAAGGGAAAGTGTAACGATGATCTTTCAAGTAACTGGCCTCTTACTATGCTTCGAAGATACATCCAATTTGTGAAAGGATACTTCAGGCCGGTCCTGACTAAGGAGGCTGAGAAAATTATTTCCAACTATTATCAGCTTCAAAGAAGATCAGCAATGGATAATGCAGCCAGGACAACGGTACGCATGCTTGAAAGTTTGATTCGCCTAGCACAAGGTTTGTTCATGTCATGTGTTTCACTGTTTCCTTGA 1809 44.67 MDISSTEMEDSPSSPVKAMAAFLIRRHSDELRSIADSPDSKLHYPLLIEFAELMDDDPPLARLLFSHPTHYLRLFDDAALWAHKIILGDPKGRPDGIKKDFIHVRVNVTGSPLECPETFPSIGSVRVKHRGVLLTLKGTVIRSGAIKMYEGERWYICRKCKHKFPVYPELETRNSIQLPSFCPSQREKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLSVGSIPRAILVILKDDLVDLVKAGDDVIVTGVLSAKWSPDLKDVRCDLDPMLIANHVRRTNELKAEVDIPDEIIMKFRHFWSDFKETPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLIGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIVFGATNPKGHYDPEQPLSVNTTLSGPLLSRFDIVLVLLDTKNPDWDAVVSSHILSECKQEKGKCNDDLSSNWPLTMLRRYIQFVKGYFRPVLTKEAEKIISNYYQLQRRSAMDNAARTTVRMLESLIRLAQGLFMSCVSLFP 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8072988 8098942 + Sed0008836.3 Sed06g0764 717307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0764 602 SUPERFAMILY Nucleic acid-binding proteins 43 261 IPR012340 -
Sed06g0764 602 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 592 IPR027417 -
Sed06g0764 602 PRINTS Mini-chromosome maintenance (MCM) protein family signature 460 472 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed06g0764 602 PRINTS Mini-chromosome maintenance (MCM) protein family signature 437 450 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed06g0764 602 PRINTS Mini-chromosome maintenance (MCM) protein family signature 487 495 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed06g0764 602 PRINTS Mini-chromosome maintenance (MCM) protein family signature 409 423 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed06g0764 602 PRINTS Mini-chromosome maintenance (MCM) protein family signature 351 366 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed06g0764 602 ProSiteProfiles MCM family domain profile. 310 513 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed06g0764 602 Pfam MCM AAA-lid domain 536 591 IPR041562 -
Sed06g0764 602 Gene3D - 291 593 IPR027417 -
Sed06g0764 602 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 15 592 IPR031327 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)
Sed06g0764 602 SMART AAA_5 352 501 IPR003593 GO:0016887(InterPro)
Sed06g0764 602 Gene3D - 124 254 IPR012340 -
Sed06g0764 602 SMART mcm 118 601 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed06g0764 602 Pfam MCM OB domain 124 254 IPR033762 -
Sed06g0764 602 Gene3D - 149 205 - -
Sed06g0764 602 FunFam Probable DNA helicase MCM9 288 596 - -
Sed06g0764 602 Pfam MCM P-loop domain 312 515 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0762 Sed-Chr6:8072988 Sed06g0764 Sed-Chr6:8072988 0.00E+00 dispersed
Sed06g0764 Sed-Chr6:8072988 Sed11g0172 Sed-Chr11:1521362 6.80E-64 dispersed
Sed06g0763 Sed-Chr6:8072988 Sed06g0764 Sed-Chr6:8072988 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0764 K10738 - csv:101205171 1066.22