Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0779 ATGTCTTCAAAGGGAAAGAAGAACTCAAAGACACTCTCTAGATTGTCAAACACGAACCAATCCCAATCTCCGTTTCCACGATTGGCAATACCCCCTGCTTCTGAAGTTTGTACAGATGATTTTCTTCCCTTCATTGAAGAAGCTTCAACTAAGTACCCTTCTTTTATTGGTAAATCTGCTTTCGTTGGGAGAGTTGCTAATGGTTCAGATAAATCTTCTCGTTGTAGAGTTTGGCTTTCTGAATCTTCTATGAATGCTTCTAACTTCACCCGAGGGACTATCGTCTCGGTAGCACTTCTTTCTGAGGGAGGTGACAATTTAAAAGGATTTCCTCTTTCCTCATTAGGAGATGAGTGTGGTAGGCACTTTGGGGTTGAGTATGGAGATTCAGTAATCAATGAAGCTGGAAATTACTTTGCTCTTGCAGAAATTTTCTCTTCCAGTAAGGAGTTAAAGGAAGGAGTGCAATTATCAACAAGCCTCTCATACACCTTGGGTTGCCCTGCAGTAGGTCGTGTTGTGTTCATCTTCCCTTTAAAAAGCCACCTATGCAATAACCCATTAAATGAAAATCAGAAATTGACGAGCAAAGAAGTTGAATCTTTGAGAATATACAATTGTAAGGAATTGTTCCTCGAGCCAGCTTTTTCAGCCAATATATCAAGAGAAGTCAACTTCTTATCTTCCTCAACTATTGATTCTAGAAAGGTTCATGGTTGTAGTGAAAATGGTAATTTAGCATCACCAAACACCGTGCTGTCTACATCTTCTAAATGTGACGTGGTATCGAATTTACGTGTAGAGAGTTCATGCACTCGTTCAATTATTGAGGTCTTAGAAGATGACAGTGCTAAAAAAACCCTGCAGATGATTGCTTTCAATTGGTTGAAGGGACGTTGTTTGCTGCGTGGTAATCTTGTAACTATCTCAGGGCTTCCAGATGCTACATTTCATGTGAAGGGTGGTAAAGGGCCATCAACATATGATTCTATGCATCATGGAGACGGCAATCATTTTGAACATTTTATGTCAAATGAACATGTGGATTCTGCTTTCAATATAGACCAACAGACAAAAGTGTTTATAAATGTTCAATCAACCACGGTTTCGAAGACAGTGCAAGAAAGAGTTCCGTCAAATGTAGAACCTCAAAATCTAAATATTAAAGCTGAAGTAAAGAGTGGAGTTCGGAAATTGGGCGGTCTTTCTAAAGAATATTCAGTTTTGAAGGATATTATAATGACCTCATCTTTAAATAGCACCTTGTCAAGCCTTGGTTTACGACCCACAAAGGGAGTACTTCTTTATGGCCCTCCTGGTACTGGAAAAACTTCTTTGGCTCGATTATGTGCTCATGACGCAGGTGTGAACATTTTCCAATTAAATGGACCTGAAATTATAAGTCAATATCATGGGGAATGTGAACAGACCTTGCATAAGGAATTCGAGAAGGCAAGTCAAGCTGCGCCTGCTGTGATATTAATTGATGAGTTGGATGCTATTGCTCCTGCAAGAAAAGATGGAGGTGAAGAGATGTCTCAAAGAATTGTTGCTACATTGCTTAATTTGATGGATGGGATCAATCGAAGTGGCGGGCCACTTGTAATTTCTTCTACCAATAGGCCCGATAGCATTGAGCCTGCGCTAAGGCGACCTGGAAGACTTGACCGGGAAATTGAAATAGGTGTGCCATCTCCCAATCAACGGTTGGATATTCTACTTACAATACTAAGGGAAATGGAGCACTGTCTTTCAGACCTGCAAGTTCAACATCTGGCTATGGTTACACATGGTTTTGTGGGTGCTGATTTGGCTGCCCTTTGCAATGAAGCTGCCTTAGTTTGTATAAGGCGCTATCACAAGTTTAAAGTTTCTACTGACTGCCTTAGTTCTGGTAGATCTGTTATAGCTGAGGAACAACATATGTTTACCAAGTTGGATCACGAAGCCAAAGTTGATGATAAGATTTTGGAGCCTGTTCTCTCAAAAGATGTAAGAAGTATATCAGGGGTTTGCTCAAATTCTACATCTGAGGCTCTAACATGTGCGTCCTCAAATGAAGTGGTATATGATAGTGAGGATACTTCTAACTCTTCTGAAATCAAGTGTACATTGAAGGTTGTTTTTGAAGATTTTGAGATGGCTAGAATGAAAGTGAGGCCTAGTGCCATGCGAGAGGTCATACTTGAAGTTCCAAAGGTAAAATGGGAAGATATTGGTGGACAAAGGGAGGTCAAGGTTCAATTAATGGAAGCAGTGGAATGGCCTCAAAAACATCAGGATGCATTTAAGCGAATAGGGACTCGACCTCCAACAGGAGTGTTGATGTTTGGTCCTCCTGGATGTAGCAAAACCTTAATGGCACGTGCTGTTGCCTCTGAAGCCGGACTAAATTTCCTTGCAGTAAAGGGCCCGGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCAGTTAGATCTCTATTTGCTAAAGCGAGAGCTAATGCCCCATCAATCATATTTTTTGATGAAATTGATGGTCTTGCTATCATCCGTGGGAAGGAAAGTGATGGAGTTTCTGTCTCTGATAGAGTGATGAGTCAACTTCTAGTTGAATTGGATGGTTTACATCAAAGAGTTGGTGTTACGGTCATTGCAGCTACCAATCGGCCAGATACAATTGATCCAGCCCTTCTAAGGCCAGGACGTTTTGATCGGCTGCTATACGTTGGACCTCCAAATGAATCTGAACGAGAAGAGATATTTCGTATCCATTTGGGCAAAATTCCTTGCAGCCCAGATGTGAGTACGAGGAAGTTGGCTTCGCTTGCTCAAGGTTGTACAGGGGCTGACATATCATTAATCTGCAGAGAAGCAGCTTTATTTGCCCTCGAGGAGAACCTTGAGGTTTCAAAAATAAATATGCAACATTTAGAAACTGCAGTTAGACATGTGAAACCGTCTGCCACTGAACCTTATCAAGAATTATCATCTAGGTTTCAGAGGCTTGTGTGTTCTAGCTCGCAAGGAGCTAATGTAGTGTGTCAGCAGCCACAATCTAACTCGTTTTCTATTTGGTCCCTTGTAAAATCTGGCGTGTTACTTTTTTCTCGGTTTCCAGCTCGTGTTCGTCACATGTTTGAAGGCTTCTAA 3135 41.21 MSSKGKKNSKTLSRLSNTNQSQSPFPRLAIPPASEVCTDDFLPFIEEASTKYPSFIGKSAFVGRVANGSDKSSRCRVWLSESSMNASNFTRGTIVSVALLSEGGDNLKGFPLSSLGDECGRHFGVEYGDSVINEAGNYFALAEIFSSSKELKEGVQLSTSLSYTLGCPAVGRVVFIFPLKSHLCNNPLNENQKLTSKEVESLRIYNCKELFLEPAFSANISREVNFLSSSTIDSRKVHGCSENGNLASPNTVLSTSSKCDVVSNLRVESSCTRSIIEVLEDDSAKKTLQMIAFNWLKGRCLLRGNLVTISGLPDATFHVKGGKGPSTYDSMHHGDGNHFEHFMSNEHVDSAFNIDQQTKVFINVQSTTVSKTVQERVPSNVEPQNLNIKAEVKSGVRKLGGLSKEYSVLKDIIMTSSLNSTLSSLGLRPTKGVLLYGPPGTGKTSLARLCAHDAGVNIFQLNGPEIISQYHGECEQTLHKEFEKASQAAPAVILIDELDAIAPARKDGGEEMSQRIVATLLNLMDGINRSGGPLVISSTNRPDSIEPALRRPGRLDREIEIGVPSPNQRLDILLTILREMEHCLSDLQVQHLAMVTHGFVGADLAALCNEAALVCIRRYHKFKVSTDCLSSGRSVIAEEQHMFTKLDHEAKVDDKILEPVLSKDVRSISGVCSNSTSEALTCASSNEVVYDSEDTSNSSEIKCTLKVVFEDFEMARMKVRPSAMREVILEVPKVKWEDIGGQREVKVQLMEAVEWPQKHQDAFKRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAIIRGKESDGVSVSDRVMSQLLVELDGLHQRVGVTVIAATNRPDTIDPALLRPGRFDRLLYVGPPNESEREEIFRIHLGKIPCSPDVSTRKLASLAQGCTGADISLICREAALFALEENLEVSKINMQHLETAVRHVKPSATEPYQELSSRFQRLVCSSSQGANVVCQQPQSNSFSIWSLVKSGVLLFSRFPARVRHMFEGF 1044
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8259989 8273064 + Sed0024109.2 Sed06g0779 717322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0779 1044 CDD RecA-like_CDC48_r2-like 745 904 - -
Sed06g0779 1044 Gene3D - 907 977 - -
Sed06g0779 1044 PANTHER AAA-FAMILY ATPASE 71 994 IPR050168 GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0016887(PANTHER)
Sed06g0779 1044 FunFam calmodulin-interacting protein 111 isoform X1 731 906 - -
Sed06g0779 1044 MobiDBLite consensus disorder prediction 1 29 - -
Sed06g0779 1044 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 624 IPR027417 -
Sed06g0779 1044 Pfam AAA+ lid domain 928 973 IPR041569 -
Sed06g0779 1044 Pfam AAA+ lid domain 586 629 IPR041569 -
Sed06g0779 1044 Gene3D - 563 734 - -
Sed06g0779 1044 FunFam spermatogenesis-associated protein 5-like protein 1 907 991 - -
Sed06g0779 1044 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 732 989 IPR027417 -
Sed06g0779 1044 Gene3D - 378 562 IPR027417 -
Sed06g0779 1044 SMART AAA_5 770 908 IPR003593 GO:0016887(InterPro)
Sed06g0779 1044 SMART AAA_5 429 565 IPR003593 GO:0016887(InterPro)
Sed06g0779 1044 ProSitePatterns AAA-protein family signature. 876 894 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed06g0779 1044 Gene3D - 735 984 IPR027417 -
Sed06g0779 1044 MobiDBLite consensus disorder prediction 1 27 - -
Sed06g0779 1044 Pfam ATPase family associated with various cellular activities (AAA) 774 905 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed06g0779 1044 Pfam ATPase family associated with various cellular activities (AAA) 433 562 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed06g0779 1044 FunFam Putative vesicular transport protein (CDC48) 384 562 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0779 Sed-Chr6:8259989 Sed08g0097 Sed-Chr8:586908 1.80E-125 dispersed
Sed06g0778 Sed-Chr6:8259989 Sed06g0779 Sed-Chr6:8259989 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0779 - - - 0.0