Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g0779 | ATGTCTTCAAAGGGAAAGAAGAACTCAAAGACACTCTCTAGATTGTCAAACACGAACCAATCCCAATCTCCGTTTCCACGATTGGCAATACCCCCTGCTTCTGAAGTTTGTACAGATGATTTTCTTCCCTTCATTGAAGAAGCTTCAACTAAGTACCCTTCTTTTATTGGTAAATCTGCTTTCGTTGGGAGAGTTGCTAATGGTTCAGATAAATCTTCTCGTTGTAGAGTTTGGCTTTCTGAATCTTCTATGAATGCTTCTAACTTCACCCGAGGGACTATCGTCTCGGTAGCACTTCTTTCTGAGGGAGGTGACAATTTAAAAGGATTTCCTCTTTCCTCATTAGGAGATGAGTGTGGTAGGCACTTTGGGGTTGAGTATGGAGATTCAGTAATCAATGAAGCTGGAAATTACTTTGCTCTTGCAGAAATTTTCTCTTCCAGTAAGGAGTTAAAGGAAGGAGTGCAATTATCAACAAGCCTCTCATACACCTTGGGTTGCCCTGCAGTAGGTCGTGTTGTGTTCATCTTCCCTTTAAAAAGCCACCTATGCAATAACCCATTAAATGAAAATCAGAAATTGACGAGCAAAGAAGTTGAATCTTTGAGAATATACAATTGTAAGGAATTGTTCCTCGAGCCAGCTTTTTCAGCCAATATATCAAGAGAAGTCAACTTCTTATCTTCCTCAACTATTGATTCTAGAAAGGTTCATGGTTGTAGTGAAAATGGTAATTTAGCATCACCAAACACCGTGCTGTCTACATCTTCTAAATGTGACGTGGTATCGAATTTACGTGTAGAGAGTTCATGCACTCGTTCAATTATTGAGGTCTTAGAAGATGACAGTGCTAAAAAAACCCTGCAGATGATTGCTTTCAATTGGTTGAAGGGACGTTGTTTGCTGCGTGGTAATCTTGTAACTATCTCAGGGCTTCCAGATGCTACATTTCATGTGAAGGGTGGTAAAGGGCCATCAACATATGATTCTATGCATCATGGAGACGGCAATCATTTTGAACATTTTATGTCAAATGAACATGTGGATTCTGCTTTCAATATAGACCAACAGACAAAAGTGTTTATAAATGTTCAATCAACCACGGTTTCGAAGACAGTGCAAGAAAGAGTTCCGTCAAATGTAGAACCTCAAAATCTAAATATTAAAGCTGAAGTAAAGAGTGGAGTTCGGAAATTGGGCGGTCTTTCTAAAGAATATTCAGTTTTGAAGGATATTATAATGACCTCATCTTTAAATAGCACCTTGTCAAGCCTTGGTTTACGACCCACAAAGGGAGTACTTCTTTATGGCCCTCCTGGTACTGGAAAAACTTCTTTGGCTCGATTATGTGCTCATGACGCAGGTGTGAACATTTTCCAATTAAATGGACCTGAAATTATAAGTCAATATCATGGGGAATGTGAACAGACCTTGCATAAGGAATTCGAGAAGGCAAGTCAAGCTGCGCCTGCTGTGATATTAATTGATGAGTTGGATGCTATTGCTCCTGCAAGAAAAGATGGAGGTGAAGAGATGTCTCAAAGAATTGTTGCTACATTGCTTAATTTGATGGATGGGATCAATCGAAGTGGCGGGCCACTTGTAATTTCTTCTACCAATAGGCCCGATAGCATTGAGCCTGCGCTAAGGCGACCTGGAAGACTTGACCGGGAAATTGAAATAGGTGTGCCATCTCCCAATCAACGGTTGGATATTCTACTTACAATACTAAGGGAAATGGAGCACTGTCTTTCAGACCTGCAAGTTCAACATCTGGCTATGGTTACACATGGTTTTGTGGGTGCTGATTTGGCTGCCCTTTGCAATGAAGCTGCCTTAGTTTGTATAAGGCGCTATCACAAGTTTAAAGTTTCTACTGACTGCCTTAGTTCTGGTAGATCTGTTATAGCTGAGGAACAACATATGTTTACCAAGTTGGATCACGAAGCCAAAGTTGATGATAAGATTTTGGAGCCTGTTCTCTCAAAAGATGTAAGAAGTATATCAGGGGTTTGCTCAAATTCTACATCTGAGGCTCTAACATGTGCGTCCTCAAATGAAGTGGTATATGATAGTGAGGATACTTCTAACTCTTCTGAAATCAAGTGTACATTGAAGGTTGTTTTTGAAGATTTTGAGATGGCTAGAATGAAAGTGAGGCCTAGTGCCATGCGAGAGGTCATACTTGAAGTTCCAAAGGTAAAATGGGAAGATATTGGTGGACAAAGGGAGGTCAAGGTTCAATTAATGGAAGCAGTGGAATGGCCTCAAAAACATCAGGATGCATTTAAGCGAATAGGGACTCGACCTCCAACAGGAGTGTTGATGTTTGGTCCTCCTGGATGTAGCAAAACCTTAATGGCACGTGCTGTTGCCTCTGAAGCCGGACTAAATTTCCTTGCAGTAAAGGGCCCGGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCAGTTAGATCTCTATTTGCTAAAGCGAGAGCTAATGCCCCATCAATCATATTTTTTGATGAAATTGATGGTCTTGCTATCATCCGTGGGAAGGAAAGTGATGGAGTTTCTGTCTCTGATAGAGTGATGAGTCAACTTCTAGTTGAATTGGATGGTTTACATCAAAGAGTTGGTGTTACGGTCATTGCAGCTACCAATCGGCCAGATACAATTGATCCAGCCCTTCTAAGGCCAGGACGTTTTGATCGGCTGCTATACGTTGGACCTCCAAATGAATCTGAACGAGAAGAGATATTTCGTATCCATTTGGGCAAAATTCCTTGCAGCCCAGATGTGAGTACGAGGAAGTTGGCTTCGCTTGCTCAAGGTTGTACAGGGGCTGACATATCATTAATCTGCAGAGAAGCAGCTTTATTTGCCCTCGAGGAGAACCTTGAGGTTTCAAAAATAAATATGCAACATTTAGAAACTGCAGTTAGACATGTGAAACCGTCTGCCACTGAACCTTATCAAGAATTATCATCTAGGTTTCAGAGGCTTGTGTGTTCTAGCTCGCAAGGAGCTAATGTAGTGTGTCAGCAGCCACAATCTAACTCGTTTTCTATTTGGTCCCTTGTAAAATCTGGCGTGTTACTTTTTTCTCGGTTTCCAGCTCGTGTTCGTCACATGTTTGAAGGCTTCTAA | 3135 | 41.21 | MSSKGKKNSKTLSRLSNTNQSQSPFPRLAIPPASEVCTDDFLPFIEEASTKYPSFIGKSAFVGRVANGSDKSSRCRVWLSESSMNASNFTRGTIVSVALLSEGGDNLKGFPLSSLGDECGRHFGVEYGDSVINEAGNYFALAEIFSSSKELKEGVQLSTSLSYTLGCPAVGRVVFIFPLKSHLCNNPLNENQKLTSKEVESLRIYNCKELFLEPAFSANISREVNFLSSSTIDSRKVHGCSENGNLASPNTVLSTSSKCDVVSNLRVESSCTRSIIEVLEDDSAKKTLQMIAFNWLKGRCLLRGNLVTISGLPDATFHVKGGKGPSTYDSMHHGDGNHFEHFMSNEHVDSAFNIDQQTKVFINVQSTTVSKTVQERVPSNVEPQNLNIKAEVKSGVRKLGGLSKEYSVLKDIIMTSSLNSTLSSLGLRPTKGVLLYGPPGTGKTSLARLCAHDAGVNIFQLNGPEIISQYHGECEQTLHKEFEKASQAAPAVILIDELDAIAPARKDGGEEMSQRIVATLLNLMDGINRSGGPLVISSTNRPDSIEPALRRPGRLDREIEIGVPSPNQRLDILLTILREMEHCLSDLQVQHLAMVTHGFVGADLAALCNEAALVCIRRYHKFKVSTDCLSSGRSVIAEEQHMFTKLDHEAKVDDKILEPVLSKDVRSISGVCSNSTSEALTCASSNEVVYDSEDTSNSSEIKCTLKVVFEDFEMARMKVRPSAMREVILEVPKVKWEDIGGQREVKVQLMEAVEWPQKHQDAFKRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAIIRGKESDGVSVSDRVMSQLLVELDGLHQRVGVTVIAATNRPDTIDPALLRPGRFDRLLYVGPPNESEREEIFRIHLGKIPCSPDVSTRKLASLAQGCTGADISLICREAALFALEENLEVSKINMQHLETAVRHVKPSATEPYQELSSRFQRLVCSSSQGANVVCQQPQSNSFSIWSLVKSGVLLFSRFPARVRHMFEGF | 1044 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 8259989 | 8273064 | + | Sed0024109.2 | Sed06g0779 | 717322 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g0779 | 1044 | CDD | RecA-like_CDC48_r2-like | 745 | 904 | - | - | |
Sed06g0779 | 1044 | Gene3D | - | 907 | 977 | - | - | |
Sed06g0779 | 1044 | PANTHER | AAA-FAMILY ATPASE | 71 | 994 | IPR050168 | GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0016887(PANTHER) | |
Sed06g0779 | 1044 | FunFam | calmodulin-interacting protein 111 isoform X1 | 731 | 906 | - | - | |
Sed06g0779 | 1044 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Sed06g0779 | 1044 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 397 | 624 | IPR027417 | - | |
Sed06g0779 | 1044 | Pfam | AAA+ lid domain | 928 | 973 | IPR041569 | - | |
Sed06g0779 | 1044 | Pfam | AAA+ lid domain | 586 | 629 | IPR041569 | - | |
Sed06g0779 | 1044 | Gene3D | - | 563 | 734 | - | - | |
Sed06g0779 | 1044 | FunFam | spermatogenesis-associated protein 5-like protein 1 | 907 | 991 | - | - | |
Sed06g0779 | 1044 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 732 | 989 | IPR027417 | - | |
Sed06g0779 | 1044 | Gene3D | - | 378 | 562 | IPR027417 | - | |
Sed06g0779 | 1044 | SMART | AAA_5 | 770 | 908 | IPR003593 | GO:0016887(InterPro) | |
Sed06g0779 | 1044 | SMART | AAA_5 | 429 | 565 | IPR003593 | GO:0016887(InterPro) | |
Sed06g0779 | 1044 | ProSitePatterns | AAA-protein family signature. | 876 | 894 | IPR003960 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Sed06g0779 | 1044 | Gene3D | - | 735 | 984 | IPR027417 | - | |
Sed06g0779 | 1044 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Sed06g0779 | 1044 | Pfam | ATPase family associated with various cellular activities (AAA) | 774 | 905 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Sed06g0779 | 1044 | Pfam | ATPase family associated with various cellular activities (AAA) | 433 | 562 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Sed06g0779 | 1044 | FunFam | Putative vesicular transport protein (CDC48) | 384 | 562 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g0779 | Sed-Chr6:8259989 | Sed08g0097 | Sed-Chr8:586908 | 1.80E-125 | dispersed | |
Sed06g0778 | Sed-Chr6:8259989 | Sed06g0779 | Sed-Chr6:8259989 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g0779 | - | - | - | 0.0 |