Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0788 ATGGAGAAAACCTCACAAACCGACGCTGCAAACGGAGAGCTCAACGATCGGAAAGACGCCGGAAACAATGGCTCCGTCTGTGGTTACTCCTCGCTTCACCAACTCCTCAACGAAAATCTCAAACCTCACCTTTTCCAGGACGTTAGCCGGTTGCTTTTAGGGCTTAACTGTGGGAAGCCGCTTCAAACTATTTCTCTTGCAGAGCCTGTGAAGAGTCTTTCTCTAAAGCATGATTTTGACCTCCAGGCTTTCCGCTTTCTTGCCGATAAAGAATCTGTGAGAGAACCTCGAATAGTAAGGGTGGGTCTCATTCAAAATTCTATTGCTCTTCCAACAACTGCCCCCTTTCCAGACCAAAAGAGAGCTATTCTTGAAAAAGTAAAGCCAATTATTGATGCAGCAGGTGCTTCAGGGGTCAACATATTATGCTTGCAAGAAGCATGGATGATGCCATTTGCTTTTTGCACTCGAGAGAAGCGGTGGTGTGAATTTGCAGAGCCAATCGATGGGGAATCGACACGGTTTCTTCAGGATCTTGCATTAAGATACAACATGGTCATTGTAAGTTCCATTCTTGAGAGAGATGTTAGTCATGGAGAAACTTTGTGGAATACTGCTGTTGTTATTGGAAACCATGGAAACATAATTGGCAAGCATCGCAAGAATCATATTCCACGAGTTGGCGACTTTAACGAGAGCACGTACTACATGGAAGGAAACACTGGGCATCCCGTGTTCGAGACAGCCTACGGGAAAATTGCAATAAATATATGCTATGGGAGGCACCATCCTTTGAACTGGTTAGCTTTTGGCTTAAATGGTGCTGAGATTGTTTTCAATCCTTCTGCCACTGTTGGTGAACTCAGTGAACCAATGTGGCCTGTTGAGGCCCGAAATGCTGCAATAGCTAATAGTTATTTTGTTGGATCAATCAATCGTGTTGGGACCGAGATTTTCCCGAATCCATTCACTTCTGGCGATGGGAGACCACAGCATCCAGATTTTGGTCACTTTTACGGGTCCAGCCATTTCTCTGCACCAGATGCGTCATGCACTCCCTCGCTCTCCCGTTTTCGGGATGGTTTATTAATCTCCGACATGGATCTCAACTTGTGTAGGCAGCTGAAAGATAAATGGGGGTTCCGAATGACTGCTCGGTACGAGTTATATGCCGAAATGCTTGCTCAGTATCTGAAGCCTGACTTTGAGCCTCAAGTTATTTCTGATCCTTTGTTACACAAGAAGGCTTCTTGA 1254 45.3 MEKTSQTDAANGELNDRKDAGNNGSVCGYSSLHQLLNENLKPHLFQDVSRLLLGLNCGKPLQTISLAEPVKSLSLKHDFDLQAFRFLADKESVREPRIVRVGLIQNSIALPTTAPFPDQKRAILEKVKPIIDAAGASGVNILCLQEAWMMPFAFCTREKRWCEFAEPIDGESTRFLQDLALRYNMVIVSSILERDVSHGETLWNTAVVIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAYGKIAINICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPVEARNAAIANSYFVGSINRVGTEIFPNPFTSGDGRPQHPDFGHFYGSSHFSAPDASCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAEMLAQYLKPDFEPQVISDPLLHKKAS 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8410790 8415200 + Sed0001289.1 Sed06g0788 717331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0788 417 Gene3D - 25 410 IPR036526 -
Sed06g0788 417 PANTHER NITRILASE C965.09-RELATED 76 395 IPR050345 GO:0003837(PANTHER)|GO:0016811(PANTHER)|GO:0033396(PANTHER)
Sed06g0788 417 MobiDBLite consensus disorder prediction 1 20 - -
Sed06g0788 417 FunFam Beta-alanine synthase 25 410 - -
Sed06g0788 417 SUPERFAMILY Carbon-nitrogen hydrolase 94 385 IPR036526 -
Sed06g0788 417 ProSiteProfiles Carbon-nitrogen hydrolase domain profile. 99 369 IPR003010 -
Sed06g0788 417 Pfam Carbon-nitrogen hydrolase 101 376 IPR003010 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0788 K01431 - - csv:101223016 799.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0788 Sed-Chr6:8410790 Sed11g1214 Sed-Chr11:27954102 5.80E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g141 . . . . Bpe02g01554 . . . . . Cma01g01709 . Car09g00306 . . . Cpe06g00254 . . . . . . . Cla05g01615 Cam05g1728 Cec05g1731 Cco05g1789 Clacu05g1717 Cmu05g1601 Cre05g1725 Cone4ag1690 Cone7ag1609 . Cone20ag0282 Lsi04g01397 . . . Blo17g00275 Blo18g00264 Bda01g01342 Bda13g01588 Bpe14g00277 . . Bma02g00546 Sed06g0788 Cmo01g01803 Cmo09g00357 Cma09g00358 . Car01g01327 . . Cpe02g00284 Bhi09g03094 Tan01g3460 Cmetu01g2122 . Hepe01g1910 Mch11g0442 . . . . . . . . . . . Cme07g00191
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008913 1 1 1 2 0 1 2 1 1 1 1 1 1 1 1 3 1 1 2 1 1 1 1 1 1 0 0 1 2 1 33